UFO10890.5prime Sequence
1103 bp (925 high quality bases) assembled on 2012-01-19
> UFO10890.5prime
CAGTCGACATGAATTTTATGGCAATATGCCTATTGGCAAATATTGGCTAC
ATACTTGGCACTACAATTGGCCAGCTTAATGACGAAGCCACAATTCGACT
AAAGGGACTTGTGGAGAAATATAAACTGCAAGCTCTTAGCAATCCCGAAT
TCTCTCAGTGGATTGGCAAACTTGAGAAAACTAGCAAGTCGAGAAGATTG
GAAGACAAAATGAAGGTCAAAGCTGAATTTAAAAACTACGACGAACGTCG
CTTGCAATTGGAAAATAAAATTAGGGAACGCATTACGGCGATCGATGACC
TCATATCCGATATTATGGCCAAAGTCCCGATAAAGGATAAAGGGTGTCTC
AAGTATTACCAACGCCAGAAAAGATCCCTTAAATTGGCCCACAATTTTTC
GAATTTAACTAAGCAAACAAACCTCATACGCAACTCGAAACAATGCGAAA
CAACTAAAGTGCAGTCTAGTGAACTAAGTGAAAGCTCTGAAAATCCGGAT
GAGTATAGTTATTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATAACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGCCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTCCTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAATTCAAACTGGTGAA
CTCACCCAGGATTGGCTGAGACGAAAAACATATTCTCATAACCCTTTAGG
AATAGCAGGTGTCACCGTACACGCCACATTTTGCGATATATGGTGTAACG
ACCTGCGAAATCGTCCTGGTATTCCCTCCAAGACGATTGAAAACGTTCCA
GTT
UFO10890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp38D-RB | 1234 | CG3-RB | 24..530 | 9..515 | 2520 | 99.8 | Plus |
| Sfp38D-RA | 640 | CG42606-RA | 24..530 | 9..515 | 2520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20641049..20641512 | 52..515 | 2320 | 100 | Plus |
| 2L | 23513712 | 2L | 20640940..20640982 | 9..51 | 200 | 97.7 | Plus |
Blast to na_te.dros performed 2014-11-27 20:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib4 | 2656 | transib4 TRANSIB4 2656bp | 2095..2186 | 435..525 | 115 | 59.8 | Plus |
UFO10890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:52 Download gff for
UFO10890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp38D-RA | 16..540 | 1..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:06 Download gff for
UFO10890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp38D-RA | 16..540 | 1..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:36 Download gff for
UFO10890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp38D-RA | 16..540 | 1..527 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:36 Download gff for
UFO10890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20641049..20641519 | 52..520 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:06 Download gff for
UFO10890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20641049..20641519 | 52..520 | 98 | -> | Plus |
