UFO10894.5prime Sequence
1031 bp (975 high quality bases) assembled on 2012-01-19
> UFO10894.5prime
CAGTCGACATGTGCTGCAATGCCAACCGCCAGCTATTATGTATCTTTACC
GGAGCATTGGCGATACTGATATCAACTTTATGTTTAGGATTCATGCTTTA
CCGGCTAGGCACGACTGGTATAAACCATTGGGAGGAGGCGTACCTGGTAG
CCTGGGCTGTCATTATTTTAGCAGCGGTACCTCTAATTGTAGGAGCAATA
AAAGAAATTCGCTATCTTTTGGTGATTTGGATAGTAGTCGCTTTAATAAG
CGGCATTTCTCTGATAGTTATTCAAATAGAAATGTTTCATAGCTTTTTTC
ATAAGGATCCTGATACAGCCTTTCATATTCTCGGTGGTATAGTCATTATA
GTTTTCGTATTATTGCTCTGCTGTTTTCTATACTTCCCATATACGTATGC
GCGTGAGCTGGAAGGAGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGAT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACT
GGTGAAACTCACCCAGGGATGGCTGAGACGAAAATGTATTCTCATAAACC
CTTTAGGAAATAGGCAGGTTTCACCGTAACACGCACATCTTGCGATATAT
GTCTAGAACTGCGGAATCGTCGTGTATTCCTCAAAGCGATGAAAACGTTT
CAGTTGCTCCATGGAAACGGTGTACAGCGTG
UFO10894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43195-RA | 1281 | CG43195-RA | 198..608 | 9..419 | 2055 | 100 | Plus |
| CG42690-RB | 1286 | CG42690-RB | 198..608 | 9..419 | 2055 | 100 | Plus |
| CG42690-RA | 761 | CG42690-RA | 198..608 | 9..419 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19945230..19945386 | 360..204 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 19945580..19945680 | 109..9 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 19945438..19945536 | 204..106 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 19945111..19945169 | 419..361 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:10 has no hits.
UFO10894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:54 Download gff for
UFO10894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42690-RA | 1..423 | 1..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:13 Download gff for
UFO10894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42690-RA | 1..423 | 1..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:41 Download gff for
UFO10894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42690-RA | 189..611 | 1..423 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:41 Download gff for
UFO10894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19945230..19945386 | 204..360 | 100 | <- | Minus |
| 2R | 19945439..19945533 | 109..203 | 100 | <- | Minus |
| 2R | 19945581..19945686 | 1..108 | 96 | | Minus |
| 2R | 19945111..19945169 | 361..419 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:13 Download gff for
UFO10894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15832944..15833038 | 109..203 | 100 | <- | Minus |
| arm_2R | 15833086..15833191 | 1..108 | 96 | | Minus |
| arm_2R | 15832616..15832674 | 361..419 | 100 | <- | Minus |
| arm_2R | 15832735..15832891 | 204..360 | 100 | <- | Minus |
