UFO10895.5prime Sequence
1008 bp (1008 high quality bases) assembled on 2012-01-19
> UFO10895.5prime
CAGTCGACATGAGCACCTCACTAAGATCCAGCCGAGGAATCAAGCTTATG
AAGTCGGGCCATTTCTCAGATGTATGCATTCGCATAGATTGTATTAGCTT
CCGGTGCCACAAAATCATCTTAGCCTGTGCTTCTGAGTTTTTTGAGAGAT
TATTTCAAGAAGATTCGGAGGAATTTTTGTTAGATGGAACAACCCCAGAA
GTTTTTCAGATATTTCTTGATTTTATATACGCTCCTAACGATGACCAATT
CGGCAATCTTGAACCGGATGTATTGATGTGTCTTCTGAAGTGCGCAAATA
TGTGGCTCGCTGTGGAAATAGAAGAAAGATGCATCGACATTCTATTAGAT
CTATCCCCTGACATGGATCCGGATGCCCTTATTGCACTTTTTGCAGTGTC
GCATTGTGTGGATCACAAAGTATTAATGGAACAGTCTATTGGAGTCCTGC
AACATATATGGAGAAACGAAATGGACTGTCCATCAACTGTCAGAATGGAA
GTCGACTGCTTCGGAGAATATTTTAAAAACACCTCGGGAATGCTTTCTCC
GCGTAGGCGCTTTGTCATGGTGGAAAACTGGATAAAAGGCAATGATTTGA
ATAATAGACCGTGCTCTCAAAAAGATAAAATTAACCAAATTATTAAGAGC
ATTAACTTTTTGGAAATGTCATTGGAGGACTTTTACAATGGTCCAGGAAA
GTCTAACGTTTTGCCCGATTCAGACAAGTTCGAAATAATGTATAAACTTG
CCCGTTTAAATAATGAATGGACTGTTATATTGGACGAAAGGGATCGAGAT
AGGTACTACATAATTGTTTTTGTGAAGAAGAAGTCGACTAATTTGTGTTT
TATTTAAAGTTGATAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CAGGTAAGTGGTCATAATCATAATCATATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGC
UFO10895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43120-RA | 1270 | CG43120-RA | 53..910 | 9..865 | 4250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14382048..14382469 | 24..445 | 2110 | 100 | Plus |
| 3L | 28110227 | 3L | 14382517..14382939 | 444..865 | 2050 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:00:15 has no hits.
UFO10895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:54 Download gff for
UFO10895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43120-RA | 45..915 | 1..873 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:14 Download gff for
UFO10895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43120-RA | 45..915 | 1..873 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:43 Download gff for
UFO10895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43120-RA | 45..915 | 1..873 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:43 Download gff for
UFO10895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14382050..14382467 | 26..443 | 100 | -> | Plus |
| 3L | 14382517..14382939 | 444..865 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:14 Download gff for
UFO10895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14375617..14376039 | 444..865 | 99 | == | Plus |
| arm_3L | 14375150..14375567 | 26..443 | 100 | -> | Plus |
