UFO10896.5prime Sequence
984 bp (984 high quality bases) assembled on 2012-01-19
> UFO10896.5prime
CAGTCGACATGTCTGGAGCGGAGTCCCTTTTTACTTGGGTGTACGGACCG
GGTGTCACGCGAGGGGGCAGTGTGGTGGGGCATCATCAGCCCGAGGCCCT
GCGACCCGTGCTCTTTCTGTTCTATACCCTGGAAACCATCTTCAACATGT
TCTGCATGGGATATCACATCTCGGGCTTTCAGGCCATCGAATTGCATGTG
TTCGAATGGGATACGAGCGTCAATATATGCACAGGTAACACACCCGCCGT
CGTCACGGAGATCTGGAAGTCCTCGGCGGCAGCCATCGTCTTTATCCTGA
TATCCTTGAGCACAATGTGGGACGCGGAGCGGCAGTTTTACGTGTTCTTT
TTTGCGAGCGAGCTTGGCGATAAGAATTCACATGCATTTGTGGAAGACCG
CCCAATACACCCGATCTTCCACTACCTTCGTGGTATGTCCATCTCCTCGC
TGACCTGCGGAATACTCTACCTGCTGCACGCCACTATCATGATCGACGTC
AAGCTTACCAATGACCGGAACCAAGGAGAGAGCAAGGGTACCTATATGCC
CATACCTCTTTTCGTCCTGGGGCGATTCATCCACAGGAAACTAAGCGCCT
ACGATTGGTTTCGGGAGTTCTGCGAGAACGATATCATTTACTTGGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGTATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCCCCAGCGGCA
UFO10896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34433-RB | 835 | CG34433-RB | 8..643 | 9..644 | 3180 | 100 | Plus |
| CG34433-RA | 898 | CG34433-RA | 277..706 | 215..644 | 2150 | 100 | Plus |
| CG34433-RA | 898 | CG34433-RA | 8..214 | 9..215 | 1035 | 100 | Plus |
| CG34432-RA | 723 | CG34432-RA | 280..372 | 257..349 | 195 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30650237..30650666 | 215..644 | 2150 | 100 | Plus |
| 3R | 32079331 | 3R | 30649968..30650174 | 9..215 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 30649430..30649522 | 257..349 | 195 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:00:19 has no hits.
UFO10896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:55 Download gff for
UFO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 5..647 | 3..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:16 Download gff for
UFO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 5..647 | 3..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:45 Download gff for
UFO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34433-RB | 5..647 | 3..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:45 Download gff for
UFO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30649965..30650174 | 3..215 | 98 | -> | Plus |
| 3R | 30650238..30650676 | 216..652 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:16 Download gff for
UFO10896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26475687..26475896 | 3..215 | 98 | -> | Plus |
| arm_3R | 26475960..26476398 | 216..652 | 98 | <- | Plus |
