UFO10901.5prime Sequence
1043 bp (910 high quality bases) assembled on 2012-01-30
> UFO10901.5prime
CAGTCGACATGATAAGAGAAAAGCTATTCGGAAAACTGCTCCTCCTGCTT
GCAATGGTTTTACCATTGGGATCAGGACAAAACAGCACCCTCAAGATCAA
CACAAACGTGAAAGATATTGAAGCTGGGGTTGTGGCTCTGCCCTCCATCC
AGGGACCCGGGAACATCTGCATACGCGAGGAGCCATATGTGGAGCACGTC
CAGGTGCCAGAGATGCAGCCGGTGCGTGTGCGGACCTCCAGTTGGTGCAT
GGAGATCCCGCCGAGATGCGCCACCTTCAAGACGGAAATGCGCGAGGTGA
TGAGGGTCCAGAAATTGAACAAAACGCGAACAGTTCGCTTCTGCTGTCAA
GGATACGAGGGAAATTTGTCGGATAGTCAAGCCACATGCAAGCCCATTTG
CAGGGGCGGCTGTGGGCGTGGCAGTTGCGTAATGCCTGACATTTGCAGCT
GCGAAGAGGGCTATATTGGCAAACATTGCACACAGCGCTGTGATCACGAT
CGCTGGGGACTGGACTGCAAGAATCTATGCCAATGTCAAAATGGAGCAGC
CTGCGACAATAAATCGGGACTTTGTCACTGCATTGCCGGTTGGACAGGAC
AATTTTGCGAGCTGCCCTGTCCACAGGGAACTTACGGCATCATGTGCCGC
AAGGCTTGCGACTGCGATGAGAAGCCTTGCAATCCACAAACGGGTGCTTG
CATCCAGCAGGATCAACCTCTCCAACTGAATGTGAGCCACGTCATCGTGA
GACTGTGACTCCACGCTGGAGAAATGGGTATATACCGCGTCCACACGCCG
TCCCTGCGAGCTATATACACACACATGAATGCACTCCAAACTGCACACAC
TGCATCAATCTCGTGACCGGTCACGAGCACGACCAGACCCCAGCTGCGTC
TAGAGATACAGATGCACGTGGCTGCAGCCGGCTGGCGGCATCAGTAGAAG
CTGACAGCACCGACATGCTGCAGCAATATGCTAATACAGTCACGTAAGTA
GACGTTCAAGCTGGTACGAATGCAGTAGCAAGTGGTTACTGAG
UFO10901.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimA-RE | 2873 | CG42282-RE | 312..1099 | 9..792 | 3840 | 99.5 | Plus |
| NimA-RD | 2877 | CG42282-RD | 312..1099 | 9..792 | 3840 | 99.5 | Plus |
| NimA-RF | 2185 | CG42282-RF | 66..853 | 9..792 | 3840 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13957850..13958152 | 9..311 | 1515 | 100 | Plus |
| 2L | 23513712 | 2L | 13960828..13961006 | 309..487 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 13961249..13961420 | 605..774 | 760 | 98.8 | Plus |
| 2L | 23513712 | 2L | 13961064..13961181 | 487..604 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:53 has no hits.
UFO10901.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:40 Download gff for
UFO10901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimA-RE | 312..1119 | 9..807 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:12 Download gff for
UFO10901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimA-RF | 66..873 | 9..807 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:24 Download gff for
UFO10901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimA-RF | 66..873 | 9..807 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:24 Download gff for
UFO10901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13957850..13958152 | 9..311 | 100 | -> | Plus |
| 2L | 13960831..13961005 | 312..486 | 100 | -> | Plus |
| 2L | 13961064..13961181 | 487..604 | 100 | -> | Plus |
| 2L | 13961249..13961471 | 605..817 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:12 Download gff for
UFO10901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13957850..13958152 | 9..311 | 100 | -> | Plus |
| arm_2L | 13960831..13961005 | 312..486 | 100 | -> | Plus |
| arm_2L | 13961064..13961181 | 487..604 | 100 | -> | Plus |
| arm_2L | 13961249..13961471 | 605..817 | 93 | -> | Plus |
