UFO10902.5prime Sequence
1140 bp (1014 high quality bases) assembled on 2012-01-30
> UFO10902.5prime
CAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTTTGTGGCAG
GTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAGCAGACGGT
GCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAGCTGCTTCAAT
CCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGAGCAACTAT
AACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGTCCAATGGG
TGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTCTATCAACA
CCTACAATGCTGGCTTATATCAAACCAATGTAGCAACACTGTCGACACCA
CAACAACATGTTTCCCATCAACACCACCACCACCTCCGCCAACAACAACA
ACAACAACATCAACAACAAGCACCACAACAACAACCACATCCACAACACC
TTCACCACCAACAACAACTAGTTGCCCCAGCTCAATCGCACAATCTTTAT
CAATTTAAAGAACCACCGCTATTGGGACCCGGAGCCGCTTTCCCACCATT
CGGAGCTCCCGAATATCACACCACCACACCGGAGAACTGGAAGGGGGCCG
CCATCCATCCCACTGGCCTGATGAAGGAGCCCGCTGGTGTTGTGCCCGGA
CGCAATGCTCCGGTGGCCTTCACACCGCAAGGACAGGCTCAGGGCGCCGT
CATGATGGTCTACGGCCTGTACCACGACACTTCCAACACGGATAAGCTCT
TCAATTTGGTTTGCCTGTACGGCAACGTGGCACGGATCAAGTTCTTGAAG
ACCAAAGAGGGCACCGCCATGGTGCAAATGGGAGACGCTGTGGCCGTTGA
GCGTTGCGTGCAGCACTTGAACAACATTCCCGTGGCACTGGTTGGCCAGA
TACAGATCGCTTTCTCAAACAGAACTTCCTATCCGAGGTGATCAACCCGG
TCTTGCTGCCCGATCATTCGCCCAGCTTCCAGGAGTACACCGGCTCCAGG
ACATTCGGTTTCCTATCGCGGGCCCAGGCGAGCTAGGATTGCATTCAACC
ACTGGAGCAGATTTGCACCTTTTCACCACACCGTCCCGCTTGAACCGAAG
ACAACTGAATGGATCCTACTCAGGATGACCGCCCAAATCG
UFO10902.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sm-RJ | 2379 | CG9218-RJ | 301..1408 | 8..1113 | 5055 | 97.6 | Plus |
sm-RT | 3226 | CG9218-RT | 1498..2283 | 330..1113 | 3445 | 96.6 | Plus |
sm-RK | 3175 | CG9218-RK | 1447..2232 | 330..1113 | 3445 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19538029..19538392 | 693..330 | 1820 | 100 | Minus |
2R | 25286936 | 2R | 19546449..19546771 | 330..8 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 19532444..19532712 | 1052..785 | 995 | 92.2 | Minus |
2R | 25286936 | 2R | 19537776..19537872 | 785..689 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:03:57 has no hits.
UFO10902.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:41 Download gff for
UFO10902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sm-RJ | 278..1353 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:14 Download gff for
UFO10902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sm-RJ | 295..1370 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:26 Download gff for
UFO10902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sm-RJ | 295..1370 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:26 Download gff for
UFO10902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19532444..19532711 | 786..1052 | 94 | <- | Minus |
2R | 19537776..19537868 | 693..785 | 98 | <- | Minus |
2R | 19538030..19538391 | 331..692 | 100 | <- | Minus |
2R | 19546449..19546774 | 1..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:14 Download gff for
UFO10902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15419949..15420216 | 786..1052 | 94 | <- | Minus |
arm_2R | 15425281..15425373 | 693..785 | 98 | <- | Minus |
arm_2R | 15425535..15425896 | 331..692 | 100 | <- | Minus |
arm_2R | 15433954..15434279 | 1..330 | 98 | | Minus |