UFO10903.5prime Sequence
1125 bp (1021 high quality bases) assembled on 2012-01-30
> UFO10903.5prime
CAGTCGACATGAGCAGCGAGGTAGATAGTAATTCACACCACGCCGCAGTG
GTTATTGACAACGGCTCTGGAGTATGTAAGGCTGGATTCTCCCCAGAAGA
TACTCCCCGTGCTGTCTTCCCGTCGATTGTGGGCAGACCTCGTCACCTGA
ACGTCCTGCTGGATTCCGTGATCGGTGATAGTGTTATTGGCGAGGCGGCA
GCCCGAAAAAGGGGAATACTAACCCTAAAGTATCCCATCGAGCACGGAAT
GGTCAAGAACTGGGATGAAATGGAGATGGTTTGGCAGCACACGTACGAGC
TCTTGCGGGCGGATCCAATGGATTTGCCGGCTCTACTCACCGAAGCCCCA
CTGAATCCGAAGAAGAATAGAGAGAAGATGACAGAGATTATGTTCGAACA
CTTTCAGGTGCCAGCTTTTTATGTAGCAGTTCAGGCTGTGCTCTCACTTT
ACGCCACCGGGCGTACTGTGGGCATTGTGGTGGACTCGGGTGATGGTGTG
ACGCACACGGTACCGATCTACGAAGGATTTGCCCTGCCCCACGCCTGTGT
ACGAGTTGATCTGGCCGGCAGGGACCTCACCGATTATCTATGCAAGCTGC
TTCTGGAGAGGGGCGTTACAATGGGCACCTCTGCTGAACGGGAAATCGTG
CGTGAAATCAAGGAGAAACTCTGCTATGTGTCAATGAACTATGCCAAGGA
AATGGATCTCCACGGAAAGGTGGAAACCTATGAGCTGCCAGATGGGCAGA
AAATCGTTTTGGGCTGCGAGAGATTCCGCTGCCCGGAGGCTCTCTTCCAA
CCCAGTTTGCTGGGTCAGGAGGTGATGGGCATCCACGAGGCCACCCATCA
CTCGATAACCAACTGCGACAGGGATCTGCGAAAGGATATGTATGCGAACA
TTGTTCTCTCTGGCGGTACGACCATGTTTCGTAACATCGAGCATAGATTC
CTGCAGACCTAACCGAATGGCTCCACCATCCATCCGATCAGGTTACGCTA
GTCCGACCGCATGATCTCCGTTGGACGTGGTTCCGCTTGGCCTCACTCAC
GAGCCTTCCAAACATGTGGATCGACGCTGGAGTTCGAAGAAGGTTGGTCG
GCAAGTCTTGATTGTTTGGCAGCCT
UFO10903.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp53D-RB | 1378 | CG5409-RB | 120..1222 | 7..1098 | 5085 | 98.3 | Plus |
| Act88F-RA | 1595 | CG5178-RA | 413..754 | 339..680 | 290 | 73.4 | Plus |
| Act87E-RC | 1853 | CG18290-RC | 400..606 | 339..545 | 255 | 75.5 | Plus |
| Act88F-RA | 1595 | CG5178-RA | 853..1013 | 767..927 | 190 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16774418..16775496 | 7..1075 | 4830 | 98.2 | Plus |
| 3R | 32079331 | 3R | 15440934..15441181 | 339..586 | 265 | 73.8 | Plus |
| 3R | 32079331 | 3R | 13426922..13427128 | 339..545 | 255 | 74.9 | Plus |
| X | 23542271 | X | 5903016..5903222 | 339..545 | 210 | 73.4 | Plus |
| 3R | 32079331 | 3R | 15441374..15441534 | 767..927 | 190 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:00 has no hits.
UFO10903.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:42 Download gff for
UFO10903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp53D-RA | 54..1162 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:17 Download gff for
UFO10903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp53D-RB | 114..1222 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:27 Download gff for
UFO10903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp53D-RB | 114..1222 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:27 Download gff for
UFO10903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16774412..16775520 | 1..1098 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:17 Download gff for
UFO10903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12661917..12663025 | 1..1098 | 97 | | Plus |
