UFO10905.5prime Sequence
1137 bp (1041 high quality bases) assembled on 2012-01-30
> UFO10905.5prime
CAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTCTGGCCCTC
ATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGACGAAAGTCA
GGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGACGGGAGGCA
TTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGCAACTTTAT
CCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACTGGATCCAT
CGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACGAGTGGCCA
GAGGTCACCAGATTCCCGCTTATCCGCCTCCGGGTTTTCCTGGACAACAG
GCTCCAGTTCCGTACCCAGCTGCAGGAGGCTCTTCAGGAGGATCCTCATC
ATCCGGTGGTTACCAAAGTGCAGGTGCTGTTTCTCCTCCTGGCTATCCTG
TTGCTGGAGCAGTTCCTGCTCAGTATCCGGTGGGAGTTCCTCCCCAGCAG
CCAGTGGGTGCAGGAGCACCTGGTTACTTCCCGGGAACTGGTGCCTATCC
TGGCTATCCCTACCCCGGAGTATACTTGCCACAGTACCCAGCGTACCCTC
AACCAGCCCAGTTCCCCGCCTATGGAGTGCTACCCGGAGCTGTGGCTCAA
CCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGGAGCACCTGGAGTGGCAGG
AGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCACCAGCGGCATGAACTATC
ATCGCTATCCGGCTCACAATCCCGCTGATCCGAGCCATTGGGACCATCAT
TTCTCGATGAACACCGAGTACAAGGAGGATGGCGTCCACAAGGGACCATT
TGGAGTGCTGAACAATCACAATGCCTTTGGCTATGGCAGTGGATATGGGG
GCGGATACACGGTGCCTTCAACTCGCCGGCCTACGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGCCAGTAGTGTCTATCTATCTATCTATCTATCAA
CTAGCTAGGATCTGCTGCAGCTGATCACATAAAGCGGGACAGTCGAATCA
GTCAGCTCGATCAGCCAGTATCCGCCATGTATCGACTACGCTCGTCGGAT
CTACGATCAGTCTAGCGCATGGACTAAGATAGAGGTC
UFO10905.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ela-RB | 1127 | CG7021-RB | 20..954 | 8..941 | 4620 | 99.7 | Plus |
| Ela-RC | 2135 | CG7021-RC | 373..1014 | 301..941 | 3155 | 99.5 | Plus |
| Ela-RA | 1187 | CG7021-RA | 373..1014 | 301..941 | 3155 | 99.5 | Plus |
| Ela-RC | 2135 | CG7021-RC | 20..313 | 8..301 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24866010..24866530 | 422..941 | 2525 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24865369..24865662 | 8..301 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 24865722..24865846 | 301..425 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:04 has no hits.
UFO10905.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:42 Download gff for
UFO10905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RB | 12..953 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:18 Download gff for
UFO10905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RB | 13..954 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:29 Download gff for
UFO10905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RB | 13..954 | 1..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:29 Download gff for
UFO10905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24865722..24865844 | 301..423 | 100 | -> | Plus |
| 3R | 24865362..24865661 | 1..300 | 99 | -> | Plus |
| 3R | 24866012..24866528 | 424..939 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:18 Download gff for
UFO10905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20691084..20691383 | 1..300 | 99 | -> | Plus |
| arm_3R | 20691444..20691566 | 301..423 | 100 | -> | Plus |
| arm_3R | 20691734..20692250 | 424..939 | 99 | <- | Plus |
