UFO10907.5prime Sequence
1149 bp (1048 high quality bases) assembled on 2012-01-30
> UFO10907.5prime
CAGTCGACATGCTTTCTCTGCAGAATCAACGGCAACCGAAGACCACCCCA
CTGACGGACGACTACGTGACCTCGAACACGGTTCTGGGCTACGGGATCAA
CGGGAAGGTGGTGCAGTGCACCCATCGCCGCACCCAACAGAACTATGCCC
TCAAGGTGCTGTTGGACAGTGAAAGGGCGCGTCGCGAAGTGGACCTGCAT
TGGCGGGTCAGCGGATGCCGGTACATTGTGAACATCATTGATGTGTACGA
GAACACGTTTAAGGACAGGAAGTGCCTCCTGGTGGTCATGGAGTGCATGG
AGGGCGGCGAGCTCTTCCAGAGAATTCAGGACAAGGCCGACGGTGCCTTT
ACGGAGCGGGAGGCGGCCCAGATAATGCACGAGATCTGCGCGGCCGTAGA
CTATCTGCACAGTCGCGACATAGCGCATCGCGATCTCAAGCCGGAGAACT
TGCTGTACACCACCACTCAGCCGAATGCGACCCTTAAATTGACGGACTTT
GGCTTCGCCAAGGAGACATTCACCAGTTACACGCTGCAGACGCCCTGCTA
CACTCCCTATTACGTGGCTCCTGAGGTTCTGGGCCCGGAGAAGTACGACA
AGAGCTGCGACATCTGGTCGCTGGGCGTGGTGATGTACATCATTATGTGC
GGATTCCCGCCGTTCTACAGCAACCACGGCCTAGCCATATCGCCCGGCAT
GAAAAATCGCATCCGCACCGGCCAGTATGACTTTCCCGATCCGGAGTGGA
CGAATGTGAGCCAGGCGGCAAAGGATCTGATCAAGGGCATGCTGAACGTG
GACCCCAGCAAGCGTCTGCGCATCCAGGTACGTCATTAGCAACAAGTGGA
TTGCCCAGTACAATGCTTGTTCCACAGACACCGCTCTGCACGGGTCGCAT
GCTAAAGGAGGCCGAGGAAACCCTGGCCCGGAGTGCAGGAGGAGATGACG
CGCTCACTGGCCACCATGCGCGTAGACTACGATCAGATGCAAATCAAGGC
GCTGGACAGTCGAACACCCGCTGCTGACGAGCGCATAAAAAGATCGAGGA
GAATGAGTTATACATGGCCAATGCCACGCGCCACGCAGCTTTCTAGAACA
TTTCGTTGGGCCGCGGTCCAGGTAATGTCTTATCGTAATCGTGATCATA
UFO10907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MAPk-Ak2-RF | 1913 | CG3086-RF | 26..1099 | 9..1081 | 5120 | 98.8 | Plus |
| MAPk-Ak2-RE | 2060 | CG3086-RE | 173..1246 | 9..1081 | 5120 | 98.8 | Plus |
| MAPk-Ak2-RD | 2045 | CG3086-RD | 158..1231 | 9..1081 | 5120 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5762101..5762659 | 567..9 | 2795 | 100 | Minus |
| X | 23542271 | X | 5761169..5761585 | 986..567 | 1920 | 98.8 | Minus |
| X | 23542271 | X | 5760722..5760823 | 1081..984 | 250 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:08 has no hits.
UFO10907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:43 Download gff for
UFO10907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAPk-Ak2-RD | 149..1232 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:21 Download gff for
UFO10907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAPk-Ak2-RB | 129..1212 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:31 Download gff for
UFO10907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MAPk-Ak2-RD | 154..1237 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:31 Download gff for
UFO10907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5761169..5761584 | 568..986 | 98 | <- | Minus |
| X | 5762101..5762663 | 1..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:21 Download gff for
UFO10907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5655202..5655617 | 568..986 | 98 | <- | Minus |
| arm_X | 5656134..5656696 | 1..567 | 99 | | Minus |
