UFO10914.5prime Sequence
1142 bp (1044 high quality bases) assembled on 2012-01-30
> UFO10914.5prime
CAGTCGACATGTTGACCGCCCTGCGTCGGAAAATTCGGTTCGGAATGCAG
CGCACGGTTTTAATTGCGGTCCTGCTGGCGGTGGGCATTTTCAGCTACGC
CTTTCTCAACCTCAAGTTCTGCTTCAAGTTGATGTCCCATCGGAGCCTCA
ACTTGATGTGCCAGAAATTCGAAAAACATGAGTACAGCGGCTCTCTGTGT
GAGGAACTCTGTGGTTCCCAATCTTCCTTCGACAACTTTCAGTGTCCGCT
GAATGATATGAAAACTATCCTCTTTACGGCCGAAAAGAACGGCGACTTGT
ATGCGGTGAAGCTGGCCCGGCACAACGATGACGAGCTGAGCTGGACGAAC
AACAAGGGGGAGTCGATATACCCCAAGCTCGAGGAGTTCCACGAGATCGT
GAAGCTGCACATCATTCTGGCGTACAATGTCACCCTGGATGATAATATGA
TCCGCGCTCTGGTCAACCAGGAAATAGCCGATGATAACTCGCAGCAGATG
GTCAGTTTTTGGCGGCTCTTCAAGGACAACAACTACATGATGGGCAAACT
TTTCGACGAGGAATCCATCTTTCCGGCTGTGCTGGGCTCCTGTGGACCCT
ACTACGCCACTGAGGGACTGGAGATTGTGCAGTCCAACCCCAGCATAATG
CAGTATCTGGCCTCCAATCGCGTGCAGCGGCTGAAGCATGCTCTCAATAT
TATGGAGTACATTTTCCGACTGGACGAAATGAAGCCGGAGCCGCTGAAGA
TGTGCAAGATGCAGTGAATCGCTTCGGAACCGCCTCTGAGCGAAGACTGA
AGTACCAGAGTGCCGAGCACGTCTATGTGGAGAGCCAGCTGGACAAGCGA
TTGTCCAGGGGCGTCAAGTGCCACGCCCACCAGGACTGCCACTTCCACTC
CTGCCGAGGATTGTGTGACGAGGAGAAGCAATCCTGCACGCACATTCAGC
AGAACACACTTCCAGATTTTCTGCGAGCACATCCTACTGGGCGGAGCACA
TTTCAGCCCGGCCTCCTCAGCGGGAGTTGCGCCTCCCCAAGGCGCTCCAG
AAGGCTGGTCAAGAATGTGCGTCAGCCGCCCAGGAGCATCAAGGTGCAAG
GACGCCAGGGTCACCCACCGCGAGCTCGCCCTGTGAGGCTTC
UFO10914.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12038-RA | 1456 | CG12038-RA | 79..1206 | 9..1133 | 5265 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 994976..995426 | 659..1108 | 1725 | 96.5 | Plus |
| 3L | 28110227 | 3L | 994707..994917 | 449..659 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 994276..994429 | 158..311 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 994061..994210 | 9..158 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 994501..994640 | 310..449 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:19 has no hits.
UFO10914.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:45 Download gff for
UFO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12038-RA | 74..1189 | 9..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:26 Download gff for
UFO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12038-RA | 79..1194 | 9..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:36 Download gff for
UFO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12038-RA | 79..1194 | 9..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:36 Download gff for
UFO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 994061..994210 | 9..158 | 100 | -> | Plus |
| 3L | 994277..994429 | 159..311 | 100 | -> | Plus |
| 3L | 994503..994640 | 312..449 | 100 | -> | Plus |
| 3L | 994708..994916 | 450..658 | 100 | -> | Plus |
| 3L | 994976..995441 | 659..1122 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:26 Download gff for
UFO10914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 994277..994429 | 159..311 | 100 | -> | Plus |
| arm_3L | 994503..994640 | 312..449 | 100 | -> | Plus |
| arm_3L | 994708..994916 | 450..658 | 100 | -> | Plus |
| arm_3L | 994061..994210 | 9..158 | 100 | -> | Plus |
| arm_3L | 994976..995441 | 659..1122 | 96 | | Plus |
