UFO10923.5prime Sequence
1136 bp (1043 high quality bases) assembled on 2012-01-30
> UFO10923.5prime
CAGTCGACATGCGTGCCGCGCCTCCTGAGCCTGAGCCTCTGCAATTAGCC
GGATCCGGTGAACAGTTCCTCGTCCTGGGCGACTCCGGCGTGGGAAAGAC
CTGTCTCCTCTACCAGTACACGGATGGCCGGTTCCACACCCAGTTCATCT
CCACTGTGGGCATCGACTTCCGCGAAAAGCGGCTGCTGTACAACTCCCGC
GGACGCCGCCACCGCATCCACCTGCAGATCTGGGACACCGCCGGACAGGA
GCGCTTCCGTTCACTAACCACGGCGTTTTACCGCGACGCCATGGGTTTCC
TGCTCATCTTCGACCTGACCAGCGAGAAGAGCTTCCTGGAGACGGCCAAC
TGGCTGTCGCAGCTGCGGACGCACGCCTACTCCGAGGACCCCGACGTGGT
CCTCTGCGGCAACAAGTGCGACCTGCTGCAGCTGCGCGTGGTGAGTCGCG
ACCAGGTGGCGGCCCTCTGCCGACGCTACCGGCTGCCGTACATCGAGACG
AGCGCCTGCACCGGCGCCAACGTCAAGGAGGCCGTGGAGCTGCTGGTTGG
CCGGGTCATGGAGCGGATCGAGAACGCGGCCTGCAACCGCGAGTTCTCCC
TGCTACTGACCCAGTCGCGATGCCTGCCGAACATCGCCTACGGTCAGCTG
GGAGGACCTGGTGCGCCTCCACGATCGGCGAGAGGAGCCCTGCTCGCGGC
GCAACTGCCGCAACTGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAAA
TTACGCCCCCGCCCTGCCACCGCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGCGCCATCACAACGGCATGATGAACCTGATCGCAG
GCGGCCATCAGACACTGTTCGCCTTGGCGTATATATTATTTTGCCCAATG
GGTGAAACGGGGGCAAGAAGTTGTTCAATTTGGCCA
UFO10923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab27-RB | 1466 | CG14791-RB | 663..1370 | 9..717 | 3505 | 99.7 | Plus |
| Rab27-RC | 1564 | CG14791-RC | 816..1468 | 64..717 | 3230 | 99.7 | Plus |
| Rab27-RC | 1564 | CG14791-RC | 663..719 | 9..65 | 285 | 100 | Plus |
| RabX4-RA | 1416 | CG31118-RA | 625..724 | 222..321 | 185 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1473980..1474511 | 717..185 | 2600 | 99.6 | Minus |
| X | 23542271 | X | 1474675..1474796 | 185..64 | 610 | 100 | Minus |
| X | 23542271 | X | 1476256..1476312 | 65..9 | 285 | 100 | Minus |
| 3R | 32079331 | 3R | 24827475..24827574 | 321..222 | 185 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:27 has no hits.
UFO10923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:47 Download gff for
UFO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 611..1326 | 1..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:30 Download gff for
UFO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 611..1326 | 1..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:39 Download gff for
UFO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab27-RB | 655..1370 | 1..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:39 Download gff for
UFO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1473980..1474510 | 186..717 | 99 | <- | Minus |
| X | 1474675..1474794 | 66..185 | 100 | <- | Minus |
| X | 1476256..1476317 | 1..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:30 Download gff for
UFO10923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1368013..1368543 | 186..717 | 99 | <- | Minus |
| arm_X | 1368708..1368827 | 66..185 | 100 | <- | Minus |
| arm_X | 1370289..1370350 | 1..65 | 93 | | Minus |
