UFO10934.5prime Sequence
1147 bp (1040 high quality bases) assembled on 2012-01-30
> UFO10934.5prime
CAGTCGACATGTGGAAGAGCCTGGGACTCGGTTGCGGTCTACTTTCTCTT
GGCGCCTTCATCTCCTGCTTTGTGGCGCTGCACATGCTCAACCAGATTAT
TCACATCGAACTGGACGCCTCCGTTGACGTGACCATGCAATTGGAGGCCG
ACAAAGATTTGGACGTACGCTGCCATGGCACCCTGATCGTTGGCAATCCG
GATGCAGCGCATCTTAGCCGGCAGGAGTTATCGTATTTGCGCTGGACGGT
GGTGTTCACGCTGCTCTACTCCTTCGCGACCACGCTCCTCATCCGGGCCA
AGTACTTGGGCAATTTTGAGATTAGCCTGGCCACCTCCAATGCGATGATG
CTGATGGGATCCCTGCTATCGGTGCTTCTGGTTATGGTCACCGTTGCTCT
CCATCAGCATGAACCATTCCCGGATCTGCGGTGCAACCAGTTGGTTGTCT
ACCACTTGTACTACATCGCCCTGAACACCGCCATCTCAGTGGTGTTCTTC
CTGGTCCATTCCATTCAGGAGCTGCTGCTGCATCGTTTACAGCCGACATT
GAAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAAGCCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTAATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAGTTGTCCATATTGGCCACGTTTAATCAAACTGGTGAAACTCCA
CCCAAGGATTGCTGAACGAAAACCTATTTCTCATAACCCTTAGGAAATAG
CCAGCTTTCCCGTAACACGCCCACATCTTGCAATATATGTGTAAGAACTG
CCGGAATCGTCTGATTCCTCCGAGCGATGAAACGTTCAGTTGCCTCA
UFO10934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32712-RB | 600 | CG32712-RB | 16..564 | 9..557 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8433389..8433673 | 344..60 | 1425 | 100 | Minus |
| X | 23542271 | X | 8433123..8433336 | 557..344 | 1070 | 100 | Minus |
| X | 23542271 | X | 8433744..8433794 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:50 has no hits.
UFO10934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:51 Download gff for
UFO10934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32712-RB | 9..568 | 1..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:42 Download gff for
UFO10934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32712-RB | 9..568 | 1..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:52 Download gff for
UFO10934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32712-RB | 9..568 | 1..562 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:52 Download gff for
UFO10934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8433123..8433335 | 345..557 | 100 | <- | Minus |
| X | 8433389..8433673 | 60..344 | 100 | <- | Minus |
| X | 8433744..8433798 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:42 Download gff for
UFO10934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8327156..8327368 | 345..557 | 100 | <- | Minus |
| arm_X | 8327422..8327706 | 60..344 | 100 | <- | Minus |
| arm_X | 8327777..8327831 | 1..59 | 93 | | Minus |
