UFO10940.5prime Sequence
1137 bp (1029 high quality bases) assembled on 2012-01-30
> UFO10940.5prime
CAGTCGACATGCCCGTTTCGATGGCCGTATGCGAAACGGCGAATGTCGTC
AACGCAGCGCTGCGCGAATCCCTTGGCGGCAACTCCTCCGCCGGCTCGTC
GACTGACCAGGCCAAGAGCGGCGAGGACACCAACGGCAGCCTGCAAAATC
ACATCGTGGCCAATGCCAAACGCATCCTGATGGCCAAAATCGAATACGAG
GAGGTGCCCAACTACCACGAATCGGTGCTGGAGAACCTCAAGTCCAAATA
TATTGTCATCAAGCCGGGAAATCCAGGCGCCATCAATGGCTTTAGTGGCA
AAAACAACACAGGCAAACTTGTGGGCGCAAATGGACATGACAATAACGGC
GCCCGCAAGCAAGCGGAGCACCCGAACAATCAGTCGCACCACATCAACCA
CCACAATCATCAGCATCCGACAAGCAATCCCAATGAGCTGCCCAAGCCAA
AGAGGGTCCTCTATCCGCGGGAGAACATACGCATTGGCTGGAAGCAGTCG
GAGCGCAAATGGCAGGTGGGCACGGGCATGATCAATGTGGGCAACACCTG
CTACCTCAACTCAACGCTTCAGGCGCTCCTGCACATACCCGCCCTGGCCA
ATTGGCTCGTTTCGGAGCAGGCGCATCTGGCTGACTGCAATGTGGCCGAA
CCTGGCAGCGGTTGCATCATTTGCGCCATGACCAAAACACTTTTGGCCAC
CCAAAGCAATCAGTCGGCCGTCAGGCCCTTCCTCATCTACTCGAAGCTAA
AGCAGATCTGCAAACACATGGTCGTTGGTCGCCAAGAGGATGCGCACGAG
TTCCTGCGCTTCCTGGTCGAGGCCATGGAGCGGGCGTATTTGATGCGGTT
TCGTAACTACAAAGAGCTGGATCAGTTGGTTAAGGAGACCACGCCGCTGG
GACAGATCTTTGGCGGCTATCTGCGCAGCGAGGTGCGCTGTCTGAGCTGC
AACCATGTGTCCATTACGTTTCAGCACTTCCAGGATCTGTGCTCGACATC
GCAGCAGACTCCTTGAGATGCTTTCGAGGGGCCCTTTTCTCGCGACGCTA
GAAGACTTGGCTACAAGTGCGAGGATGCAGGATGAAGTATCTGCCCAAGC
ATTCCCTTGGAACCGTCTATCGCTTGTATACGCCTGA
UFO10940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scny-RH | 4303 | CG5505-RH | 476..1578 | 4..1095 | 5085 | 98 | Plus |
| scny-RG | 4470 | CG5505-RG | 476..1578 | 4..1095 | 5085 | 98 | Plus |
| scny-RD | 4417 | CG5505-RD | 597..1699 | 4..1095 | 5085 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5771617..5772329 | 339..1045 | 3260 | 98.5 | Plus |
| 3L | 28110227 | 3L | 5769598..5769933 | 4..339 | 1650 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:49 has no hits.
UFO10940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:39 Download gff for
UFO10940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RD | 595..1703 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:10 Download gff for
UFO10940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RD | 474..1582 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:22 Download gff for
UFO10940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RD | 595..1703 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:22 Download gff for
UFO10940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5769596..5769933 | 1..339 | 99 | -> | Plus |
| 3L | 5771618..5772375 | 340..1087 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:10 Download gff for
UFO10940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5762696..5763033 | 1..339 | 99 | -> | Plus |
| arm_3L | 5764718..5765475 | 340..1087 | 97 | | Plus |
