UFO10945.5prime Sequence
1147 bp (1033 high quality bases) assembled on 2012-01-30
> UFO10945.5prime
CAGTCGACATGTCGACGCCAGAGAACAAAATCCCGACGGTCACTGCGGGC
TACGGAGAAAACGAGAAGCCCAAAGGCGGCAAAGGCGGGCAATCCAAGTT
CATACGTTCGGACATGGCCGACGTACCCGTGCAGCAGGCGGCAGGATCGA
CGCTTCCGTTGGTAATCTCTCGGAAAAAAGGCGACGACTCCGAGGATGGC
AACTACAATCCGTTCGAGCACCGCAAGGTGGAGCATCCGACATCGGATCT
CGAGACATTTGTACACTTGCTAAAGGGATCGCTTGGCTCCGGAATATTGG
CCATGCCAATGGCCTTCTCCCACGCTGGATTGTGGTTCGGTTTGGTGGCC
ACCTTCGCGGTGGGCACCTTGTGCACCTACTGCGTCCACATTCTGGTCAA
GTGCGCCCACATCCTGTGCCGACGTCGTAAAATCCCGATGATGGGATTCG
CCGATGTGGCGGAACAGGCTTTCCTCGACGGACCACCTGCCCTGAATCGC
TGGTCACGCTTCATCCGGTTCATGGTCAATACGTTTCTGGTTATCGATTT
GCTGGGCTGCTGCTGCATCTATCTGGTTTTCGTGGCCACCAATGTGGAGC
AGGTCGTGCGGGTGTATATGGAAACGGAGCTGAGCATTAGAGTTTGGATC
ATGATCGTGACGGCACCGCTAATCTTTATGTGCCTGGTACGCAACCTGAA
GTTCCTCACGCCCTTCTCGATGATAGCCAACATCCTGATGTTCGTGGGCA
TCGTGATCACCTTCATCTATATGTTCTCCGATATTCCTGCACCCGTGGAA
CGTCCTGAATTTGTGAGTGTAACCGAATGGCCATTGTTCTTCGGCACCGT
GATCTTTGCTCTGGAGGGCATCGGTGTAGTTATGTCCCTGGAGACGACAT
GAAGACCCCAGCCACTTCATCGGTTGCCCATCTGTCCTGAACTTCGGCAT
GGTCTGGTGATTGCCCTCTACACTCTGGTTGGATTCTTTGGCTTCCTGAG
TACGGCCCGGAAACCCAGGCCAGCATTACGCCTGACTGCCTTGGAGGAAT
AGTTGCCAATCCGTCAGTTGATGAATGCATCCGCATCTTCTTCACTCACC
CTGGCAGTTCCACTGCGGTCAGATTGGAAGCCCTGGACCAAGAATCC
UFO10945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RD | 2188 | CG43693-RD | 92..1205 | 8..1110 | 5115 | 97.9 | Plus |
| CG43693-RG | 2434 | CG43693-RG | 357..1451 | 27..1110 | 5020 | 97.9 | Plus |
| CG43693-RB | 2399 | CG43693-RB | 322..1416 | 27..1110 | 5020 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11037644..11038434 | 1031..245 | 3725 | 99.2 | Minus |
| 3L | 28110227 | 3L | 11039617..11039764 | 245..98 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 11039996..11040068 | 99..27 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:31 has no hits.
UFO10945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:47 Download gff for
UFO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6327-RD | 83..1117 | 1..1031 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:31 Download gff for
UFO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RD | 85..1119 | 1..1031 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:41 Download gff for
UFO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RD | 85..1119 | 1..1031 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:41 Download gff for
UFO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11039998..11040068 | 27..97 | 100 | <- | Minus |
| 3L | 11037644..11038434 | 245..1031 | 99 | <- | Minus |
| 3L | 11039618..11039764 | 98..244 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:31 Download gff for
UFO10945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11030744..11031534 | 245..1031 | 99 | <- | Minus |
| arm_3L | 11032718..11032864 | 98..244 | 100 | <- | Minus |
| arm_3L | 11033098..11033168 | 27..97 | 100 | <- | Minus |
