UFO10951.5prime Sequence
1139 bp (1033 high quality bases) assembled on 2012-01-30
> UFO10951.5prime
CAGTCGACATGTGGCTTCTCTGGTTTATTCTCCACCTAATTGGCCTCATC
CAAGGGCGTTCTGTGGGCGGTGGGTCTGTAAACTTGGATGACGAGTTTTT
CATGCCTCAGCCAGATCCCACAATATTTGCCTACAATCAAACTGATAAGG
GATCATCACCCTGGGACAATACCTGGAACGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT
ATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACG
CCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTAT
TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTA
ACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCA
TACGAAATTCCGGATGAGCATTCATCACGCGGGCAGATGTGAATAAAGGC
CGGATAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAGGCCGTATAT
CCAGCTGACGGTCTGGTTATAGGTACATTGAGCACTGACTGAAATGCCTC
AAATGTTCTTTACGATGCCATGGATATATCACGGTGGTATATCCAGTGAT
TTTTTTCTCCATTTAGCTCTAGCTCCCGAAGAATCCTAACTCGTTAGCCA
TACTTTATACGAAGTTAAGATCCAATTATGAGATTATCA
UFO10951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43109-RA | 261 | CG43109-RA | 15..185 | 9..179 | 855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18868067..18868153 | 95..9 | 435 | 100 | Minus |
| 2R | 25286936 | 2R | 18867924..18868009 | 179..94 | 430 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 748..815 | 123 | 68.1 | Plus |
UFO10951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:48 Download gff for
UFO10951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43109-RA | 8..194 | 1..187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:34 Download gff for
UFO10951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43109-RA | 8..194 | 1..187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:44 Download gff for
UFO10951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43109-RA | 8..194 | 1..187 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:44 Download gff for
UFO10951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18867924..18868007 | 96..179 | 100 | <- | Minus |
| 2R | 18868067..18868160 | 1..95 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:34 Download gff for
UFO10951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14755429..14755512 | 96..179 | 100 | <- | Minus |
| arm_2R | 14755572..14755665 | 1..95 | 96 | | Minus |
