UFO10954.5prime Sequence
1160 bp (1060 high quality bases) assembled on 2012-01-30
> UFO10954.5prime
CAGTCGACATGACGTATCTTTTTGTGTGGATTTTTTTGTGCTCATTGGGA
TCTTGCCAGTTGGCGTATTCCATGTTTTTGAAGCAGCCCTGTGGAAAAAC
ACCAGTCCCGAAAATTATTTCAGGCTCAAACGCAAGTCAACAAAGTGCTC
AGTATATGGCAGGCATTTTTAATACAACACATTTGTTGTGCGGCGGCACG
ATTATTCACGAAGATTTTGTTTTAACGGTTGCTCATTGCAAAAGTACACA
AACGCTATTCGTGAGACTTGGAGCGTACAACATTAATCACCCGACCGATC
AGATTCGCGTAATCGAAACTATAGCCCATCCACAATACAGCAATTCCACT
TATGCCAACGATATAGCCCTGGTGAAGTTGGAGAGGAGTGTGATATTTAA
CCTTAATATTCAACCAATATGCATTCACTTGGACGCAACATTGGGCAAAC
AAATACGCTATTATAATGCCTTTGGATGGGGAAGAACAAGAAATGCCGAG
CAAAGCGATATACTTCAAAGAATTTTTGTTAATCGAACCAACCCAATGAT
ATGCCATCTCTATTTGGGAATGAGTCCCGATCCGAAACAGATATGTGCGA
CTACCGACCAAGGAGATACATGTGCCGGCGATTCTGGCGGTCCGTTGATC
AGCAAAATTACTTACCAGGGGAAGAATTTCGATACACAGTTCGGGATTAC
CAGTTATGGCACCAGGGAATGCAATGGAGTTGGTCTCTATACCGATGTCT
CACAGTATAGTGGCTGGATTGCAAATATAGTTAGGAGCAAACAGGATCGT
AGTGTGGTCAGTAGGAGGAGCAACGGTATGTTTCTGTATTCTGACTGCAC
TGGCGATTCCATCGGATCCATTCTAATGGCAACCATCGTTGGACTTCAAT
ACTCCGCGAAGGTGTACTGATCACCGACCGCCATGTCCTAACCACTGCGG
ACTTTTCCCAGACACCCCTTCTCCTTAGCCATTGTTGTGATGGGTATGGA
TTCAAGCTAGGGGCGATTTTTAGCGTTTGGCGGACATTAACATATCACTG
ATTAGCCTGACGCGTCGTGGAACAGAGGGGTGCATTGAAACCGATCTGCA
TCTGGAAACCTGCAACCTCGCTGTGTCTTTAGAATTATGCAGTCAATATG
GCCTAGCAAT
UFO10954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43110-RA | 1671 | CG43110-RA | 24..1157 | 6..1131 | 5225 | 98.1 | Plus |
| CG43110-RB | 8272 | CG43110-RB | 2192..3325 | 6..1131 | 5225 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17482905..17483433 | 930..403 | 2595 | 99.8 | Minus |
| 2R | 25286936 | 2R | 17483822..17484029 | 213..6 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 17483492..17483637 | 402..257 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 17482633..17482725 | 1067..977 | 250 | 87.1 | Minus |
| 2R | 25286936 | 2R | 17483698..17483742 | 256..212 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:38 has no hits.
UFO10954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-30 11:49:49 Download gff for
UFO10954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43110-RA | 1..1125 | 9..1126 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:36 Download gff for
UFO10954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43110-RA | 18..1151 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:46 Download gff for
UFO10954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43110-RB | 2186..3319 | 1..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:46 Download gff for
UFO10954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17483822..17484031 | 1..213 | 98 | | Minus |
| 2R | 17482791..17482839 | 930..976 | 95 | <- | Minus |
| 2R | 17482906..17483433 | 403..929 | 99 | <- | Minus |
| 2R | 17483492..17483637 | 257..402 | 100 | <- | Minus |
| 2R | 17483698..17483740 | 214..256 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:36 Download gff for
UFO10954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13370997..13371142 | 257..402 | 100 | <- | Minus |
| arm_2R | 13371203..13371245 | 214..256 | 100 | <- | Minus |
| arm_2R | 13370296..13370344 | 930..976 | 95 | <- | Minus |
| arm_2R | 13371327..13371536 | 1..213 | 98 | | Minus |
| arm_2R | 13370411..13370938 | 403..929 | 99 | <- | Minus |
