UFO11001.5prime Sequence
1135 bp (1008 high quality bases) assembled on 2012-02-08
> UFO11001.5prime
CAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCGACAAGGAT
GCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATTCTGGGCAG
GGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGACGGGCAAGG
AGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGTCAGGCGAG
ACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATCTCAATACT
GCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGATGTGTTCG
AGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCAAAGGTGAA
CTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAGAAGACGCG
CACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACACGCGAAGA
GCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGGACGAGAAC
CACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTGCAAGAGGG
CGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGCTCCCGAAA
CGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGCAGGAAGTC
GACATATGGGCCTGTGGCGTGATTATGTTTACGCTGCTCGTCGGTTGTCC
ACCTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATATCATGGAGG
GCAAGTACAGCTTCACCTCGCCGGAGTGGGCTGATATTTCAGAGGATCCC
AAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAACGTATAAC
CGTCAAAGAAGTATTAAGACATCCATTCTTCAACCAAATGGTGTTAATGG
GTGATCGCCGGCATCCGGCCCCGCCCATCGCGCCCGCCCAAACGAACAGC
AGCATCTGCTGCAACCCGAGGCGTCATCGTATCGCTTTGGTCAGCTGACC
AGTAGTTGCGCCGGTCCCCCATTTTCTTGTACTGGTGCGCCACAGAAGCT
CCTACTCGTCGATCGAATGCCGCGACGGGGCGCTTGGACGATGCAGTGCA
ATGTCTGCATCTCGGCCACCTGCCATGTCATGTTC
UFO11001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PhKgamma-RE | 3111 | CG1830-RE | 678..1800 | 9..1133 | 5230 | 98.3 | Plus |
| PhKgamma-RD | 2723 | CG1830-RD | 290..1412 | 9..1133 | 5230 | 98.3 | Plus |
| PhKgamma-RH | 2522 | CG1830-RH | 512..1398 | 9..895 | 4405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11697311..11697595 | 280..564 | 1425 | 100 | Plus |
| X | 23542271 | X | 11697063..11697244 | 98..279 | 910 | 100 | Plus |
| X | 23542271 | X | 11698299..11698435 | 656..792 | 685 | 100 | Plus |
| X | 23542271 | X | 11700620..11700814 | 890..1084 | 615 | 94.4 | Plus |
| X | 23542271 | X | 11698493..11698599 | 786..892 | 505 | 98.1 | Plus |
| X | 23542271 | X | 11696449..11696541 | 9..101 | 465 | 100 | Plus |
| X | 23542271 | X | 11697661..11697751 | 565..655 | 455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Helena | 1317 | Helena HEL 1317bp | 923..968 | 355..310 | 113 | 71.7 | Minus |
UFO11001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:29 Download gff for
UFO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RE | 696..1826 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:56 Download gff for
UFO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RD | 283..1413 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:02 Download gff for
UFO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RD | 283..1413 | 1..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:02 Download gff for
UFO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11696442..11696540 | 1..100 | 96 | -> | Plus |
| X | 11697066..11697244 | 101..279 | 100 | -> | Plus |
| X | 11697311..11697595 | 280..564 | 100 | -> | Plus |
| X | 11697661..11697751 | 565..655 | 100 | -> | Plus |
| X | 11698299..11698435 | 656..792 | 100 | -> | Plus |
| X | 11698500..11698597 | 793..890 | 98 | -> | Plus |
| X | 11700621..11700862 | 891..1135 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:56 Download gff for
UFO11001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11590475..11590573 | 1..100 | 96 | -> | Plus |
| arm_X | 11591099..11591277 | 101..279 | 100 | -> | Plus |
| arm_X | 11591344..11591628 | 280..564 | 100 | -> | Plus |
| arm_X | 11591694..11591784 | 565..655 | 100 | -> | Plus |
| arm_X | 11592332..11592468 | 656..792 | 100 | -> | Plus |
| arm_X | 11592533..11592630 | 793..890 | 98 | -> | Plus |
| arm_X | 11594654..11594895 | 891..1135 | 92 | | Plus |
