UFO11002.5prime Sequence
1144 bp (1013 high quality bases) assembled on 2012-02-08
> UFO11002.5prime
CAGTCGACATGGTGCGCTCCACTGCCCGAGCCTCGTTGCGCAAGGCAGCA
TCCACACTTTCGTCTAACTCGACACCGGAGGCTCCAGCTATGGCACCCGC
TGCTTCGACTGCTCCAGCTGCTCCGGCTGCTCCAGCTGCTCCAGCTGCTC
CTCTTGTCCGCGAACGATCGCTGGCCAAGCGGATCAAGGCACCTCCCTGT
GATCGTTGTCCCCACTGCGATCGTACCTTTAATCCCAAGGCATTTGATCG
CCACGTAGAATGGTGTAAGGAAAAGGCCATTCAGGCCACCATGAAGTCCA
CCAACAGCCAGGAGACCAGCAAAGCCAAGGAGCGCCTGGAGGCCAGGAAG
CAGTACAGGCCGCCCAATCTGAAGACCAAGAGATCCCTCGCCAGGGATAA
GTACTCCGGTAACCACGAGGAGGTTCTGGAAGCGGGTGAGATGACAACAC
CCAAACCAAACCTGATGTCCCATTCGATGACGTCGTCCGTGCACAGTGAT
AACACTCAAGCTCAAGTCTCCAGCTCGCGAGGAGGAAGTCGTGCCAAAGC
AAACTCCACGGTTACCCAGAACCAAGTGAACCTGTTCAATGAGGATCCAC
CATCATCGCCGCCGCCCAGGGAACGATCTGCACTGCGCCGTTCCAAGCGC
ACTCAGCGGGAATCCTGCATAGAAATTGACGAGACCATGGAACAACTAAG
GCGGAACGGCAGTGGAGATGCTCTCCAGTTGGCCAAACTCGATTGCGTGG
AAGCGCCAGTTCTCCAGCCAGCTAGACGACGCAAGAGAGGGCCCAAGACG
GATAAACTAGATGCGGTCGAAAAGCAATCTGCCTTCCCCAAGTAACCATG
ACATTTGACGAGCTCAATGGGTTAATCAAGCGCAAAGGCGGCACGCCCAT
TTGCAATGTGAAAAGGGATGAGCAAGGAATCGGTAGTCTGATCTCAAGCA
CCAATCATCAGCAACCCTAGTGCGTCAGGCGCGTCGTCGATTCGCAACAA
GGAGACCCCGATCTGATTTGCGTGCCCTGCAATCGTCATGTCAGCAATTT
CCAAGAATGTAAGTATGCTTCTGAACTCTAGCTATGGCCAATGCAGAATC
AGTCAAGGGTGTACTCGGAATCGAGGAGATTCGCAGTTCAAGAT
UFO11002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-RH | 4400 | CG30460-RH | 569..1709 | 9..1134 | 5150 | 97.5 | Plus |
| CG30460-RF | 6303 | CG30460-RF | 930..2070 | 9..1134 | 5150 | 97.5 | Plus |
| CG30460-RE | 6950 | CG30460-RE | 1577..2717 | 9..1134 | 5150 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17071119..17071505 | 888..503 | 1885 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17071971..17072336 | 374..9 | 1830 | 100 | Minus |
| 2R | 25286936 | 2R | 17071727..17071855 | 502..374 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 17070487..17070678 | 1071..886 | 540 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:15 has no hits.
UFO11002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:30 Download gff for
UFO11002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 565..1714 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:59 Download gff for
UFO11002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 1568..2717 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:05 Download gff for
UFO11002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 1568..2717 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:05 Download gff for
UFO11002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17071120..17071505 | 503..887 | 99 | <- | Minus |
| 2R | 17071727..17071855 | 374..502 | 100 | <- | Minus |
| 2R | 17071972..17072341 | 1..373 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:59 Download gff for
UFO11002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12958625..12959010 | 503..887 | 99 | <- | Minus |
| arm_2R | 12959232..12959360 | 374..502 | 100 | <- | Minus |
| arm_2R | 12959477..12959846 | 1..373 | 98 | | Minus |
