UFO11003.5prime Sequence
1189 bp (1055 high quality bases) assembled on 2012-02-08
> UFO11003.5prime
CAGTCGACATGGATCAGCCACTGGTGGTGCAGGCGGAGTACTCCTTCATG
GGCAGCAATAACGACGAGCTGTGCTTCCAGAAGGGCGATGTCATCACGGT
TACCCAGCGCGAGGATGGTGGCTGGTGGGAGGGAACGCTGAACGATAAGA
CTGGCTGGTTTCCCAGCAACTATGTGAATGAGTGCAAGGTGCAGCTGCCT
CTAACGGAGACCATAAGGCCGCCGGAGGAGATCCAGGAGTATCGGTCTGT
GGTGCTCAAGGATCTGCTTGACTCGGAGCGCGCCCATGTGGCCGAGCTGC
AGGGTCTGCTCGAGAATTTCTTGGAGCCCATGCAACAGACGCAAATACTC
AGTCAGGATGAGTACGCCCAGCTGATGTGTAACTTTGTAGAGATTGTGCG
TACGCACGAGGATTTGCTTATCCAGATCGAGGAGTGCAACGATCGAGTGG
GAAAACTATTTCTCACCAGCGCCCCCTTGATGAAGAAGGTGCACCAGGCG
TACTGCGCTGCCCATCCAAAGGCCATTGTCATACTGGATAAGTACAAGGA
CGAGCTGGAAAAGTATATGGAACGACAGGGCGCAGCCACTCCTGGATTAC
TTGTGCTCACGACGGGTCTATCAAAGCCCTTCCGGCGACTGGACAAATAC
TCGGCCATGCTGCAGGAGCTGGAGCGGCATATGGAGAGCAGTCATCCGGA
TCGCGGCGACACCCAGCGGAGTGTTGCCGTGTACAAAGACATAGCTGCCA
CCTGCTCGGCCACCCGTCGCCAAAAGGAGCTGGAGCTGCAAGTGCTCACG
GGGCCAGTGCGTGGATGGCAGGGCCAAGAGCTGAGCACCCTCGGGGACAT
CATCCACATGGGCAGCGTTGCAGTTGGAGCTGATCATCGCGACCGATACT
TTGTGCTCTTCCCTCAAACATTGCTATTCCTTAGCGTTAGTCAGCGGATG
AGTGCATTCATCTATGAGGCAAGCTACCCTTAACTGGGATCATAGTGAAT
CGCCTGAGACCCGGATGCCCTGAATGACGCCTTGGAAATAGCAGTCCCTG
ATCGATCGCATTTACAGTTTGTCAAGGTCGAATGAGGCCAACAAGTGGGT
GGAGCTGCCTCATGCCATAATCCCAACCTGGCCATGCATCAAACGCCATT
GAATAACTTGAAACAACTCTCTCGCTTAGTACACCTTAA
UFO11003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RtGEF-RE | 2995 | CG10043-RE | 509..1695 | 9..1186 | 5330 | 97.4 | Plus |
| RtGEF-RH | 4343 | CG10043-RH | 509..1695 | 9..1186 | 5330 | 97.4 | Plus |
| RtGEF-RG | 3938 | CG10043-RG | 149..1335 | 9..1186 | 5330 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20356085..20356506 | 548..969 | 2110 | 100 | Plus |
| 2L | 23513712 | 2L | 20355410..20355747 | 9..346 | 1690 | 100 | Plus |
| 2L | 23513712 | 2L | 20355806..20356007 | 347..548 | 1010 | 100 | Plus |
| 2L | 23513712 | 2L | 20356562..20356709 | 968..1108 | 325 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:18 has no hits.
UFO11003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:31 Download gff for
UFO11003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtGEF-RC | 489..1629 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:00 Download gff for
UFO11003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RtGEF-RG | 139..1279 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:06 Download gff for
UFO11003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RtGEF-RG | 139..1279 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:06 Download gff for
UFO11003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20355400..20355747 | 1..346 | 98 | -> | Plus |
| 2L | 20355806..20356006 | 347..547 | 100 | -> | Plus |
| 2L | 20356085..20356505 | 548..967 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:00 Download gff for
UFO11003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20355806..20356006 | 347..547 | 100 | -> | Plus |
| arm_2L | 20355400..20355747 | 1..346 | 98 | -> | Plus |
| arm_2L | 20356085..20356505 | 548..967 | 99 | -> | Plus |
