UFO11005.5prime Sequence
1146 bp (1034 high quality bases) assembled on 2012-02-08
> UFO11005.5prime
CAGTCGACATGTTCAATGTTCTACAGCGCCTGCTGGGTGTCGATCAGCCG
GCCAATAAGGTCGTGGAAATTAAGAGCGAAGCGCTGGGGACACTTCAAGT
CCTGGCCCGCGATGACGCCATGCTCCTCTTTGCACCGCCCTTCAACAGCA
GCAATGAAAAACGAGCCGTCTATGAGATCATTTTGCAGCGACCCACCTCG
GATTCCAATACCACATCCTTCAGTCTGTACCGGTCGCCGGTGCAGCAGGA
AGCCGAGGAACGCTTCAATGCCTTTCTGCAAAGGCTGCCCGTTTTCGTCA
GCATTGTGAAAGAGTACTACAATGTAAATGGGCTGCAGAAAGCTTGCGAT
GCCTTGGCTGATAATCCCTCCTGGACGCTGTCCCATTTGATTGCCTACTT
CAATCTGGTGGACTACATTAGCAATCCCAAGATGCTCCAGTGCGTGGACC
AAGCAGATGCCGCCACCCTAATGTCGCCCTTCCAGTTGGCCATCAAACAG
GGTCACATGGAGATGGTGAAGGCTCTGCTGCCGCTGAGCAAGCTGGAACA
CTTGGATATAAACAGCAATTCGGTGTTTCATTACGCCGCCAGCACCACCA
AAGAGATTATCAATCTTATCATCGATAAAAGCACGGTAAATCTGAATCAT
CTCAACTCCGATGGGTACACACCACTTCATGTCGCCTGCCTCGCCGACAA
GCCAGAGAATGTGAAGGCACTGTTGCTGGCTGGGGCCAATGTCAATCTCA
ATGCCAAGGACATCCGCAAAGTGTACAAGACATCCGCACCGACCACGGTT
TCCTCGTTTCTGCGCACCAATGTTAGCAAGCTGTACACACAGGACATGAA
ATATGGCGGCACTCCTCTGCACTGGTGTTCCTCCCGTGAAACCCTGCATG
CGCTGATCATGGAGGGTTGTGATGTCACGCCACGAACTTTGATGGACGGA
CAGCACTGCACGTGATGGTGGCCAGATCGGTCGAGTGCGTGTCCACTACT
GCCACGATGCGGAGATCGATGTGCTGACAGACGAATGCAGCTTTGCACAT
TGCCATTGAAAGAACTATGCGATCGTCATGTCTGGGTGTCTTGGGTGTAA
CTCATCTGAGAACAGAATGCTAGCCAGGTCATGTGCCTATGATGCT
UFO11005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iPLA2-VIA-RA | 3269 | CG6718-RA | 148..1276 | 9..1114 | 5075 | 97.7 | Plus |
| iPLA2-VIA-RD | 3592 | CG6718-RD | 480..1599 | 18..1114 | 5030 | 97.7 | Plus |
| iPLA2-VIA-RC | 3685 | CG6718-RC | 573..1692 | 18..1114 | 5030 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9862451..9862908 | 1059..615 | 1800 | 96.9 | Minus |
| 3L | 28110227 | 3L | 9862963..9863264 | 614..313 | 1510 | 100 | Minus |
| 3L | 28110227 | 3L | 9863321..9863617 | 314..18 | 1485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:21 has no hits.
UFO11005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:32 Download gff for
UFO11005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 151..1243 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:03 Download gff for
UFO11005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 151..1243 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:08 Download gff for
UFO11005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iPLA2-VIA-RA | 141..1233 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:08 Download gff for
UFO11005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9862429..9862908 | 615..1077 | 96 | <- | Minus |
| 3L | 9862963..9863262 | 315..614 | 100 | <- | Minus |
| 3L | 9863321..9863617 | 18..314 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:03 Download gff for
UFO11005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9855529..9856008 | 615..1077 | 96 | <- | Minus |
| arm_3L | 9856063..9856362 | 315..614 | 100 | <- | Minus |
| arm_3L | 9856421..9856717 | 18..314 | 100 | | Minus |
