UFO11007.5prime Sequence
953 bp (935 high quality bases) assembled on 2012-02-08
> UFO11007.5prime
CAGTCGACATGGAAGACGGTCACTCGAAAACCGTCGAACAGTCCCTCAAC
TTCTTCGGAACGGACCCCGAGCGCGGCTTAACCCTCGACCAGATCAAGGC
TAACCAGAAGAAATACGGACCCAATGAGTTGCCGACTGAGGAAGGAAAGA
GCATCTGGCAGCTGGTCTTGGAGCAGTTCGACGATCTGCTGGTGAAGATT
CTGCTGTTGGCAGCCATCATCTCATTTGTTCTCGCCCTGTTTGAGGAACA
CGAGGAAACGTTCACTGCATTTGTAGAGCCCCTAGTTATTTTACTTATCC
TGATAGCCAACGCCGTGGTGGGAGTATGGCAGGAGCGTAACGCCGAGTCG
GCCATTGAGGCCCTCAAGGAGTACGAGCCTGAGATGGGCAAGGTGGTGCG
CCAGGACAAGTCCGGCATCCAGAAGGTGCGCGCGAAAGAGATCGTGCCCG
GTGACCTGGTTGAGGTGTCTGTCGGTGACAAGATCCCTGCCGATATCCGT
ATCACCCACATCTACTCGACCACCCTTAGGATCGATCAGTCCATCCTCAC
CGGTGAGTCGGTCTCCGTCATCAAGCACACCGATGCCATCCCCGATCCCC
GCGCCGTCAACCAGGACAAGAAGAACATCCTGTTCTCCGGCACCAACGTC
GCAGCCGGCAAGGCCCGTGGCGTCGTCATCGGCACTGGCCTGAGCACCGC
CATCGGCAAGATCCGTACTGAGATGTCCGAGACCGAGGAGATCAAGACCC
CCCTGCAGCAGAAACTGTACGAGTTCGGTGAGCAGCTGTCCAAGTCATTT
CCGTCATTTGCGTTGCCGTGTGGCCATCAACATCGGCCACTTCAACGACC
CGCTCACGGAGGCTCCTGGATCAAGGTGCCATCTACTACTTCAAGATCGC
CGTCGCTCCTGGCTGGGGCTGCATCCCGGAGGTCTGTCCGCCGTCATCAA
CAA
UFO11007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ca-P60A-RI | 6306 | CG3725-RI | 661..1606 | 9..949 | 4500 | 98.8 | Plus |
| Ca-P60A-RF | 3839 | CG3725-RF | 661..1606 | 9..949 | 4500 | 98.8 | Plus |
| Ca-P60A-RH | 5028 | CG3725-RH | 217..1162 | 9..949 | 4500 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23931603..23932329 | 949..228 | 3230 | 98.5 | Minus |
| 2R | 25286936 | 2R | 23932667..23932784 | 126..9 | 590 | 100 | Minus |
| 2R | 25286936 | 2R | 23932404..23932490 | 229..143 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:23 has no hits.
UFO11007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:33 Download gff for
UFO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RD | 90..1045 | 1..951 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:06 Download gff for
UFO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RH | 208..1163 | 1..951 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:09 Download gff for
UFO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RH | 208..1163 | 1..951 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:09 Download gff for
UFO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23932574..23932591 | 127..144 | 100 | <- | Minus |
| 2R | 23932667..23932790 | 1..126 | 96 | | Minus |
| 2R | 23931601..23932329 | 228..951 | 98 | <- | Minus |
| 2R | 23932406..23932488 | 145..227 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:06 Download gff for
UFO11007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19819124..19819852 | 228..951 | 98 | <- | Minus |
| arm_2R | 19819929..19820011 | 145..227 | 100 | <- | Minus |
| arm_2R | 19820097..19820114 | 127..144 | 100 | <- | Minus |
| arm_2R | 19820190..19820313 | 1..126 | 96 | | Minus |
