Clone UFO11008 Report

Search the DGRC for UFO11008

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:110
Well:8
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptens-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11008.5prime Sequence

1140 bp (1046 high quality bases) assembled on 2012-02-08

> UFO11008.5prime
CAGTCGACATGGCGAGTCTTGGGGGCCAACACGGAAATATTTCGACTAAT
CCAGAAGTGGAAAACACAGCCAAGCGACCCGAAAGTCGCGAGGGCAGCGC
CGAGCGAAAAGCGTCCAAAGACCGTGAGGAGAAACTAAAATATGCCCGCG
ATCGCCAAAATGAGGAGCGCCACCGGAAAATCGAGGAACTGCGTGCCCAG
GCGGAGGCCGCCCAGCGGTACCGTGAACAAAAGGAGGAGGAGCGCCGTCG
ACGCATCGAGGAGATCCGTACCCGGGACACAGAGAAGCGCCACCAGGTGG
AGGAGCGCAAGAAGGCCATTTTCGAGGCCGAGAAGGAGCGCCGCGAGTAC
ATCCTCAAAAAGAATCAGGAACGCGAGTCCCGGATAGAAGTGAAAAAACG
GGACAGAAACTCCATCGGCTTCGCATTTGGCTCCTCGACTCCCCGCCTGC
TGGATGTGCCCGCGGATTATGGTCTGGTATCGCCCAGTGCCTTTTGGGGT
CAGCGGAGGTCCACATCTATATCGAACGTAGCGGGCGCCTCGCTCACACG
TCGAAGTTCAGAGCGTGAACTTGCCGACAGTGGTGCTAAGAAGCGTGCCT
CCTCATCGACGGACCGACAAGATGAAGATAGCGTTGACTCATCACCCATG
GTGTTCCGAAGCGTTTACCGCAGGAAAACGGACCTTATGCCGACAATACC
TAGCCCCCGAGACGGGCATTATGGTTCGCGAGGCTCCCTGAGCTCGACGC
CGGCCAGAACCCCAGGCTCGCGATCGGGAAATGCCACGCCCGGCGGACAC
TTCAATAACTCAAGGCCCGGCAGCGCCATGTCCACATCGACAAACATGTC
CACATCCGGGCTGGTGCCCAGGCGACCGGCAACGGCACCCCGGGAAACCG
AGGCCCGCCAGTATCGCCGGACGGGCATGTCTCTCGAGGAGATTACAAAC
TCAGAGGGATCAGAGCCGCCCGTGAGACGACAGCCGCTCGCATCCGCACA
AACGACACCCAACGACTGCAACTTATGTCACCCTCCCTGATCGTGACTTC
AGCTCATCGCGGCTGACAGCCGCGAAAGAAGACGCTTCGAGCGGAACTCG
TACCAAGCAGCATCAGCCTCAAGGGCCCTCCAGTCGCCAC

UFO11008.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
ens-RL 4674 CG14998-RL 49..1187 9..1126 5040 97.4 Plus
ens-RE 4443 CG14998-RE 49..1187 9..1126 5040 97.4 Plus
ens-RK 4379 CG14998-RK 49..797 9..766 3645 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4131955..4132214 369..110 1300 100 Minus
3L 28110227 3L 4126989..4127164 939..764 785 98.9 Minus
3L 28110227 3L 4131748..4131892 510..366 725 100 Minus
3L 28110227 3L 4129650..4129792 766..624 715 100 Minus
3L 28110227 3L 4131121..4131238 624..507 590 100 Minus
3L 28110227 3L 4133769..4133824 111..56 280 100 Minus
3L 28110227 3L 4134454..4134502 57..9 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:05:26 has no hits.

UFO11008.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:34 Download gff for UFO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
ens-RE 41..1144 2..1090 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:07 Download gff for UFO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
ens-RE 41..1144 2..1090 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:11 Download gff for UFO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
ens-RE 41..1144 2..1090 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:11 Download gff for UFO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4126989..4127162 766..939 98 <- Minus
3L 4129651..4129791 625..765 100 <- Minus
3L 4131121..4131236 509..624 100 <- Minus
3L 4131750..4131889 369..508 100 <- Minus
3L 4131956..4132212 112..368 100 <- Minus
3L 4133769..4133822 58..111 100 <- Minus
3L 4134454..4134510 2..57 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:07 Download gff for UFO11008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4131750..4131889 369..508 100 <- Minus
arm_3L 4131956..4132212 112..368 100 <- Minus
arm_3L 4133769..4133822 58..111 100 <- Minus
arm_3L 4134454..4134510 2..57 93   Minus
arm_3L 4126989..4127162 766..939 98 <- Minus
arm_3L 4129651..4129791 625..765 100 <- Minus
arm_3L 4131121..4131236 509..624 100 <- Minus