UFO11008.5prime Sequence
1140 bp (1046 high quality bases) assembled on 2012-02-08
> UFO11008.5prime
CAGTCGACATGGCGAGTCTTGGGGGCCAACACGGAAATATTTCGACTAAT
CCAGAAGTGGAAAACACAGCCAAGCGACCCGAAAGTCGCGAGGGCAGCGC
CGAGCGAAAAGCGTCCAAAGACCGTGAGGAGAAACTAAAATATGCCCGCG
ATCGCCAAAATGAGGAGCGCCACCGGAAAATCGAGGAACTGCGTGCCCAG
GCGGAGGCCGCCCAGCGGTACCGTGAACAAAAGGAGGAGGAGCGCCGTCG
ACGCATCGAGGAGATCCGTACCCGGGACACAGAGAAGCGCCACCAGGTGG
AGGAGCGCAAGAAGGCCATTTTCGAGGCCGAGAAGGAGCGCCGCGAGTAC
ATCCTCAAAAAGAATCAGGAACGCGAGTCCCGGATAGAAGTGAAAAAACG
GGACAGAAACTCCATCGGCTTCGCATTTGGCTCCTCGACTCCCCGCCTGC
TGGATGTGCCCGCGGATTATGGTCTGGTATCGCCCAGTGCCTTTTGGGGT
CAGCGGAGGTCCACATCTATATCGAACGTAGCGGGCGCCTCGCTCACACG
TCGAAGTTCAGAGCGTGAACTTGCCGACAGTGGTGCTAAGAAGCGTGCCT
CCTCATCGACGGACCGACAAGATGAAGATAGCGTTGACTCATCACCCATG
GTGTTCCGAAGCGTTTACCGCAGGAAAACGGACCTTATGCCGACAATACC
TAGCCCCCGAGACGGGCATTATGGTTCGCGAGGCTCCCTGAGCTCGACGC
CGGCCAGAACCCCAGGCTCGCGATCGGGAAATGCCACGCCCGGCGGACAC
TTCAATAACTCAAGGCCCGGCAGCGCCATGTCCACATCGACAAACATGTC
CACATCCGGGCTGGTGCCCAGGCGACCGGCAACGGCACCCCGGGAAACCG
AGGCCCGCCAGTATCGCCGGACGGGCATGTCTCTCGAGGAGATTACAAAC
TCAGAGGGATCAGAGCCGCCCGTGAGACGACAGCCGCTCGCATCCGCACA
AACGACACCCAACGACTGCAACTTATGTCACCCTCCCTGATCGTGACTTC
AGCTCATCGCGGCTGACAGCCGCGAAAGAAGACGCTTCGAGCGGAACTCG
TACCAAGCAGCATCAGCCTCAAGGGCCCTCCAGTCGCCAC
UFO11008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ens-RL | 4674 | CG14998-RL | 49..1187 | 9..1126 | 5040 | 97.4 | Plus |
ens-RE | 4443 | CG14998-RE | 49..1187 | 9..1126 | 5040 | 97.4 | Plus |
ens-RK | 4379 | CG14998-RK | 49..797 | 9..766 | 3645 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4131955..4132214 | 369..110 | 1300 | 100 | Minus |
3L | 28110227 | 3L | 4126989..4127164 | 939..764 | 785 | 98.9 | Minus |
3L | 28110227 | 3L | 4131748..4131892 | 510..366 | 725 | 100 | Minus |
3L | 28110227 | 3L | 4129650..4129792 | 766..624 | 715 | 100 | Minus |
3L | 28110227 | 3L | 4131121..4131238 | 624..507 | 590 | 100 | Minus |
3L | 28110227 | 3L | 4133769..4133824 | 111..56 | 280 | 100 | Minus |
3L | 28110227 | 3L | 4134454..4134502 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:26 has no hits.
UFO11008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:34 Download gff for
UFO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ens-RE | 41..1144 | 2..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:07 Download gff for
UFO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ens-RE | 41..1144 | 2..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:11 Download gff for
UFO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ens-RE | 41..1144 | 2..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:11 Download gff for
UFO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4126989..4127162 | 766..939 | 98 | <- | Minus |
3L | 4129651..4129791 | 625..765 | 100 | <- | Minus |
3L | 4131121..4131236 | 509..624 | 100 | <- | Minus |
3L | 4131750..4131889 | 369..508 | 100 | <- | Minus |
3L | 4131956..4132212 | 112..368 | 100 | <- | Minus |
3L | 4133769..4133822 | 58..111 | 100 | <- | Minus |
3L | 4134454..4134510 | 2..57 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:07 Download gff for
UFO11008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4131750..4131889 | 369..508 | 100 | <- | Minus |
arm_3L | 4131956..4132212 | 112..368 | 100 | <- | Minus |
arm_3L | 4133769..4133822 | 58..111 | 100 | <- | Minus |
arm_3L | 4134454..4134510 | 2..57 | 93 | | Minus |
arm_3L | 4126989..4127162 | 766..939 | 98 | <- | Minus |
arm_3L | 4129651..4129791 | 625..765 | 100 | <- | Minus |
arm_3L | 4131121..4131236 | 509..624 | 100 | <- | Minus |