UFO11009.5prime Sequence
1101 bp (981 high quality bases) assembled on 2012-02-08
> UFO11009.5prime
CAGTCGACATGGATGTGGCGAAGCTGGAGAAGATGAAGGTGGTGGACCTG
CGCAACGAGCTCCAGTCGCGCGGCCTGGACACCAAAGGAGTCAAAGCGGT
GCTCGTCGAGCGCCTGAGGGCATATGTGGAAGGAGGAGCCGGCGACGGTG
AAAATGCGCCGGTCACACCAAGCCGCCGTCAGCGTCGCACGCGCTCTATG
TCCCGCTCTCCATCGCCGGTGCAAGCTGCTCCCGTGGCCGCAGAACCAGT
GCTCGATACTCTCGAAGAGGAGGAGCAGCCGGAGGATAAGACAGTGCCAC
AGCCAGAACCAGAAAGTGAACAGCCAGCAGCCGAGCCGGAACCAGAACAA
AGTGAGCCGGAGGAAGCTGAGCCAGCTGCAGCAGTGACAGAGGACACAAC
CGTCAACCAAGCGGTCAATGAGGAGTCGCAGCCTGAGCCCGAAGAGTTTG
ATGAAAAGTCGGAGACAGACGACAAGCAGGAGACAATCGAAGAGGCAGTA
CCCGCCGTCGTACCACAGAATGAAGTGGCTGATGAACCCATGGAAGAGGA
TCATGATGCTGCCCCTGAGGAGCAGGAACCTACACAAACTGAGGAGCCTG
TAGAGGAGAAACCAGCCGAGAGCACTGTGGCCGAGCATCAGTCAAATGGC
GACAGCCAGAAAATGGACGTTGATGAGGAGGATTCGGCCGCCCCGAAAAC
GGCGGAGGAGACCGAGCCAGCAGCTAAGCCTGAGGATCAGCCCCCGGAAC
GCCGCAAGCGATCACACAGTCGGTCCAAATCCCGATCGCGCAGTGGCTCC
CGCTCGTCCAAACATCGCGGCAGCGTATGTGACAAGCGTGAGTCAAAGGC
AGCGGCCGAGGAACGCACAGTTCCTGAGACGAGCCAACCATCGAGGAGAC
AAGTCGGATTGAGCTGCTGACTCTGACTGCATTACGCATCGACCACACGT
TGCATCGCAACCCTGACTCGAATTACTCGCTATGTCGACGGCCACTACGA
TGCCGAGCATGGCTGAGTGGCCTCAGATCGGCGAAATCGCACACTCCGAG
ACGATGCCAGATCCTGGATCAGCAAGTCTTGTGCAGGAGCATCTGCATGA
C
UFO11009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-RD | 4620 | CG30122-RD | 311..1253 | 9..944 | 4525 | 99.2 | Plus |
| CG30122-RC | 4623 | CG30122-RC | 311..1253 | 9..944 | 4525 | 99.2 | Plus |
| CG30122-RB | 4620 | CG30122-RB | 311..1253 | 9..944 | 4525 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18637849..18638618 | 916..150 | 3705 | 99.4 | Minus |
| 2R | 25286936 | 2R | 18638819..18638960 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:28 has no hits.
UFO11009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:34 Download gff for
UFO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RD | 304..1268 | 1..957 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:09 Download gff for
UFO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RB | 306..1270 | 1..957 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:13 Download gff for
UFO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RB | 306..1270 | 1..957 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:13 Download gff for
UFO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18637847..18638617 | 151..917 | 99 | <- | Minus |
| 2R | 18638819..18638965 | 1..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:09 Download gff for
UFO11009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14525352..14526122 | 151..917 | 99 | <- | Minus |
| arm_2R | 14526324..14526470 | 1..150 | 97 | | Minus |
