UFO11011.5prime Sequence
1077 bp (1005 high quality bases) assembled on 2012-02-08
> UFO11011.5prime
CAGTCGACATGGAAGAAAGTCAGCCAAGGTATGGCGCTATGTGGACATTC
AAGCTGGTGGCACCATACGTAATTGGCGGCTACCTATGCGGCCTCGCGGT
AACGCTCGCATGGAACTGGTGGCAGCTGGGCCACTTGGTTCTGGGTCTTA
ATCTCACCTTCGCGATTCCGGTGGCGCTTGTTCTGGCGGTCTTTTACAGC
AGGCCCGTAAGGTGCATTGTGACTTTGGCCCTTCCCTCGCTGTGCAGCTC
TCGGGGAAGGGCGTTCCTCATCAGCCTTGCCTTTGTTATTGCCGCAGTTG
GGCCTACGGCGAACATTCTAGCCAATTTGAAGGTGATGCTCCGCAGCCTC
GCTTGCGGACAGGAGCTATTGCGTCAGGCGCTTGGCCAGATGTTGGACGT
AATACTGGAGCCGGTGAATGCCATCCAGCTAGCGGTGGATCTCTTGATGC
GGGAAGTGCGTCGGGTGCTCAAGCTGGCCATGGTAGTGCTGTTACGCATT
CAGGACCAATTGATCGCAATTACAAGCATTTTTAAGTTTATCCGCCGCAG
AAAGCGTAATGAGTTTAACCACACACGGAATGTGAAGCACACCAGAAACT
ACACTTGGCTGAACAATAGATTCTCCTGTTTAATGTGCATGTGCTCCTGC
TGCTCATCCTGTCAAAGCACTGAGAGGTGCACCATATGTGGCCGATCTCT
GACTCTTTCAAATCGTAACCCCTGCGACACTCCTGGATGCAAAGGGGTTT
ATTGCGGTAAATGCTTTGAAAAGTCACACAATAAGTGTTGTCTGTGCAAT
CGACCAGTGGATTATGGTGATTTTTCCGACGTTACTGAAGTAGACGACTC
TTCGGACTATTCTGAAAAAGAGTCTTTTAGCGAAGGGCAGTACAGGAAGA
CCTGTGAGGACACGCGCAAGCTTTCTAGACCATTCGTTGGCGCGCGGGCC
CAGGTAAGTGTCATATCATATCATATCATATCATAATCACACTAGCCTAG
AGATCCTGTCATGACTAGTGCTTGATCTCACCATTAAAACGCCCGGCGGC
ACCGAGCGTTCTGAACAAATTCCAGAT
UFO11011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6845-RD | 1069 | CG6845-RD | 71..976 | 8..912 | 4490 | 99.8 | Plus |
| CG6845-RE | 2294 | CG6845-RE | 71..585 | 8..522 | 2575 | 100 | Plus |
| CG6845-RC | 2176 | CG6845-RC | 71..585 | 8..522 | 2575 | 100 | Plus |
| CG6845-RE | 2294 | CG6845-RE | 1810..2201 | 522..912 | 1920 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 146770..147082 | 210..522 | 1565 | 100 | Plus |
| 3L | 28110227 | 3L | 146503..146708 | 8..213 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 148462..148645 | 523..706 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 148704..148841 | 707..844 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 148895..148956 | 845..906 | 295 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:06 has no hits.
UFO11011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:28 Download gff for
UFO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 51..964 | 8..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:52 Download gff for
UFO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 71..984 | 8..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:00 Download gff for
UFO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 71..984 | 8..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:00 Download gff for
UFO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 146503..146706 | 8..211 | 100 | -> | Plus |
| 3L | 146772..147082 | 212..522 | 100 | -> | Plus |
| 3L | 148462..148645 | 523..706 | 100 | -> | Plus |
| 3L | 148704..148841 | 707..844 | 100 | -> | Plus |
| 3L | 148895..148971 | 845..921 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:52 Download gff for
UFO11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 146503..146706 | 8..211 | 100 | -> | Plus |
| arm_3L | 146772..147082 | 212..522 | 100 | -> | Plus |
| arm_3L | 148462..148645 | 523..706 | 100 | -> | Plus |
| arm_3L | 148704..148841 | 707..844 | 100 | -> | Plus |
| arm_3L | 148895..148971 | 845..921 | 93 | | Plus |
