UFO11012.5prime Sequence
1044 bp (950 high quality bases) assembled on 2012-02-08
> UFO11012.5prime
CAGTCGACATGGAAAACACGCCTCTCAAGTTTCCACACGAAATTCGCGAT
GTGGAGGAGTCCACCAATGCTGAGCTATTGGATCACTTCCATGGTGAGCG
AACTGGCTTCGTTCAGGTCGGATCGGAGGGTTACTTCTTTCCGCACAAGT
ACAAGGACGAGGCCGAGCGGTACTACAACTTTGAGGCACGGCCGGATGAC
GTGTGGATAGCCACGGTGCCCAGATCGGGCACCACTTGGACGCAGGAGCT
CATTTGGCTGGTGGCCAATGGGCTGGATTTTGAGCATGCCCAGGAGCGAC
CACTAACCGAACGCTTTCCATTCTTTGAATTTCCGCTCTTTGTGCATCCC
AAAATTAAGGAAGAGCTGCAGGAGGAAAACCGAGACTCGGCTGAAGCTCT
GGAGTTCATTGAGAAGATAGCTCGACCGGGTTACGAGGCTTTGAGCGAAA
TACCACGCTCGCAGCGACGGTTTATCAAAACGCATTTCCCCTTTTCTCTA
ATGCCGCCTAGTGTTCTCGAAAAGAAGTGCAAGGTGATCTATGTGGTTCG
TGATCCCAAGGATGTTGCAGTTTCCTACTACCATTTGAACAGACTCTTCC
GCACCCAAGGATACGTCGGAGATTTTGAGCGTTACTGGCATTATTTCCAA
AACGGATTAAATCCCTGGCTGCCCTATTACAGTCACGTTAAGGAGGCGCG
GGAGCATGCCCATTTGTCCAATGTACTCTTTCTGCGCTACGAAGACATGT
TGGCTGATCTGCCAGGTGCAATCAACAGCATAGCCAGCTTCTTAGAGTGT
CCACCGAAACCCGAGGATATGGATAGGCTACTCGATCATCTGAGCATCAA
AGCTTCCGTGAGAACAAGTTCGTAAACATGCACGAAATGGCTTCGTTGGC
GTCTCTCAACAAAAGGAGAGGCTAGGATTTCGTTGCCGCAGCGGGAGCCA
AGACGCGTATCAGCCGCACATGGAGTTCGGTGAGAATCCGGAAGCCTTTT
GAAGAGCGCCAACGAAGTGGGGTTGCACAGAAATATTAAATCAT
UFO11012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St4-RB | 1183 | CG6704-RB | 137..1163 | 9..1044 | 4685 | 97.8 | Plus |
| St4-RA | 1081 | CG6704-RA | 35..1061 | 9..1044 | 4685 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13970354..13970685 | 660..329 | 1660 | 100 | Minus |
| 2R | 25286936 | 2R | 13970741..13970976 | 328..93 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 13969956..13970304 | 1015..661 | 1125 | 94.1 | Minus |
| 2R | 25286936 | 2R | 13971041..13971127 | 95..9 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:09 has no hits.
UFO11012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:29 Download gff for
UFO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6704-RA | 23..917 | 1..894 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:55 Download gff for
UFO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St4-RA | 27..921 | 1..894 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:01 Download gff for
UFO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St4-RA | 27..921 | 1..894 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:01 Download gff for
UFO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13971043..13971131 | 1..93 | 94 | | Minus |
| 2R | 13970354..13970685 | 329..660 | 100 | <- | Minus |
| 2R | 13970070..13970304 | 661..894 | 99 | <- | Minus |
| 2R | 13970741..13970975 | 94..328 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:55 Download gff for
UFO11012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9857575..9857809 | 661..894 | 99 | <- | Minus |
| arm_2R | 9857859..9858190 | 329..660 | 100 | <- | Minus |
| arm_2R | 9858246..9858480 | 94..328 | 100 | <- | Minus |
| arm_2R | 9858548..9858636 | 1..93 | 94 | | Minus |
