UFO11013.5prime Sequence
965 bp (845 high quality bases) assembled on 2012-02-08
> UFO11013.5prime
CAGTCGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCACTGCTCCTG
ATTTTGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAGTTCTCACC
GGATCCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGGAGCTCCCC
TGATGACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGACGAGCACC
ACGCTTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACCAGTCAATC
GCAATATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCCGGCTCGAC
CATTCGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACTATGTGGCA
GCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCCAAGGAGGA
GCAGTCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATACGCCAGCT
CCATCTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCGATAGTCAT
AACGTGGTGACGGCACGCCAGTATACCGACGTAGTCATACCCTGTAAACC
AGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGGAGAAATGC
ATTCCAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGATTCACCATC
GAAATCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGACCCAATCC
GCCATTCCCGCATAACGAAGAGGAGATGACCAGCATAGAAGTGCGCTTTA
TTGAAGACGGCAAACCGCTGCCAAAGCCCGTGTCAGCTCGGAGACCGCTC
CGAACACTCCCTGATGAGATCGTCTGTCTTCGATGATGTCTCGCGAGACA
ATGTCACAACTCAACGCGCTCAGAGCTGTGAGACGTGTATGCATCAACAA
GAATAGCTCACATGCTAGGATCACGAGCTCAGATGGCTCTTACACTATAT
ACGCTGTATGCAGGG
UFO11013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RG | 5153 | CG8222-RG | 325..1098 | 9..782 | 3870 | 100 | Plus |
| Pvr-RE | 5311 | CG8222-RE | 378..1151 | 9..782 | 3870 | 100 | Plus |
| Pvr-RL | 5149 | CG8222-RL | 198..942 | 9..753 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8228494..8229012 | 596..78 | 2595 | 100 | Minus |
| 2L | 23513712 | 2L | 8227670..8227826 | 753..597 | 785 | 100 | Minus |
| 2L | 23513712 | 2L | 8230125..8230194 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:37 has no hits.
UFO11013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:38 Download gff for
UFO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RG | 314..1103 | 1..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:18 Download gff for
UFO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RE | 370..1159 | 1..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:21 Download gff for
UFO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RE | 370..1159 | 1..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:21 Download gff for
UFO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8226570..8226606 | 754..789 | 94 | <- | Minus |
| 2L | 8227670..8227826 | 597..753 | 100 | <- | Minus |
| 2L | 8228494..8229011 | 79..596 | 100 | <- | Minus |
| 2L | 8230125..8230200 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:18 Download gff for
UFO11013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8226570..8226606 | 754..789 | 94 | <- | Minus |
| arm_2L | 8227670..8227826 | 597..753 | 100 | <- | Minus |
| arm_2L | 8228494..8229011 | 79..596 | 100 | <- | Minus |
| arm_2L | 8230125..8230200 | 1..78 | 94 | | Minus |
