UFO11014.5prime Sequence
1110 bp (1021 high quality bases) assembled on 2012-02-08
> UFO11014.5prime
CAGTCGACATGTTGGAAGTGGTTTTTGGGCGAGGAATGGAACTGGAGCCG
CGAGTGGCCATACTGCAGGACCTGCGCCTGCAGACCTTCGACTCCATTCG
ATTTGCCTCCTACCGCACCGCCTCCAAGCTGCGCTATATACAGAAGTCCA
CAAATCTGCACTTGGTGGACATATGGAATGTGATCGAGGCCTTTCGCGAG
AATGGCCTGAACACCCTGGAGCCGCAGAGCGAGGTGAGCGTGGCCAGGCT
GGAAACCCTGGTCTCCTCCCTCTATCATAACCTCAACAAGCGCCTGCCCA
CCGCTCAGCAGGTGCCTGTGGACTCGAAGGCGGGTCTGCTGCTCAACTGG
CTGCTGGCCGCGTACACAAGTGATAACTCGGGCAAGATACGCGTTTTCTC
CATCAAAGTGGCCCTGGCCACTATGTGCTCTGGCAAGCTGGTGGACAAAC
TAAGATACATATTCTCGCAGATCTCGGATGGCGCTGGACAGCTGGTGGCC
TGGAAGCTGGGCGAGTTCCTGCGCGAAGTGCTGGCCCTGCCGGCGGCCGT
GTACGAGTCGCCCACATTCCACTACAAGGAGGGGCTCGAGGAGGAGATCT
TCCCGGCCGAGAATAAGGTGACGGTGAACGACTTTATGGCCACGCTGATG
TCCGAGCCGGGGCCGTCCTGCCTCGTCTGGCTGCCGCTGGTGCACCGGCT
GGCCACCGTGGAGACCATTGTGCATCCGACTGTCTGCTCTGTTTGCCACA
AGGAAAACTTCACCGGGTTTCGTTATCGCTGTCAGCGGTGTCACGCCTAC
CAGTTGTGTCAGGAGTGCTTCTGGCACGGCAAGACATCGCTGATCACCAG
AACGATCACGAGGTCAAGGAGTACTCGAGCTACAAGTCGCCCAGCAAACA
GATCGGTCACTCGCTGCGCAAGAGCTTCCGCTGTGTGCCCGAGAAGACGT
GCAGTGCTCCCTCGCTTCCCCGACCAGCCGGAGAAGACGCTCAACTGTCG
CACATCGTGCGCCCTCGCCGCTGCATCGCACACGGCTCTCGACCCTCGGG
CTCGTACATACACCACGTCCGCATCGGTCTCGGGCAGCCGGCCTTCGAAT
CGCTCAGACA
UFO11014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyb-RH | 2889 | CG8529-RH | 46..1107 | 9..1059 | 5035 | 99 | Plus |
| Dyb-RC | 2845 | CG8529-RC | 46..1107 | 9..1059 | 5035 | 99 | Plus |
| Dyb-RG | 2761 | CG8529-RG | 546..1588 | 28..1059 | 4940 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12448312..12448884 | 457..1024 | 2615 | 99.1 | Plus |
| 2R | 25286936 | 2R | 12447758..12448100 | 28..370 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 12448161..12448248 | 369..456 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:40 has no hits.
UFO11014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:38 Download gff for
UFO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RH | 49..1117 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:20 Download gff for
UFO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RC | 39..1107 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:21 Download gff for
UFO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RC | 39..1107 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:21 Download gff for
UFO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12447759..12448100 | 29..370 | 100 | -> | Plus |
| 2R | 12448163..12448248 | 371..456 | 100 | -> | Plus |
| 2R | 12448312..12448925 | 457..1059 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:20 Download gff for
UFO11014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8335264..8335605 | 29..370 | 100 | -> | Plus |
| arm_2R | 8335668..8335753 | 371..456 | 100 | -> | Plus |
| arm_2R | 8335817..8336430 | 457..1059 | 98 | | Plus |
