UFO11015.5prime Sequence
1152 bp (1024 high quality bases) assembled on 2012-02-08
> UFO11015.5prime
CAGTCGACATGAGCACCCCCACGGACTCGAAGGCGCCGTTGCGCCAGGTG
AAGCGCGTACAGTTCGGCATTTTGTCCCCTGATGAAATTCGTCGCATGTC
CGTCACCGAGGGTGGCGTCCAGTTTGCGGAGACAATGGAGGGCGGACGAC
CAAAGCTGGGCGGATTGATGGATCCGCGCCAGGGTGTCATAGACAGGACG
TCGCGCTGTCAGACGTGCGCCGGCAATATGACCGAGTGCCCCGGTCACTT
TGGACACATCGACCTGGCCAAACCAGTGTTCCACATCGGCTTCATCACCA
AGACAATTAAGATTTTGCGATGTGTGTGCTTCTACTGCTCCAAAATGTTG
GTCTCGCCACACAATCCAAAGATCAAGGAGATCGTTATGAAGTCTAGGGG
ACAGCCGCGTAAGCGCCTGGCCTACGTCTATGATCTGTGCAAGGGCAAGA
CGATTTGCGAGGGCGGCGAGGACATGGATCTCACCAAGGAGAACCAGCAG
CCGGATCCAAACAAAAAGCCCGGCCACGGCGGTTGCGGTCACTACCAGCC
GTCGATCCGGAGAACAGGACTGGATCTCACCGCCGAGTGGAAGCATCAGA
ACGAGGATTCGCAGGAGAAGAAGATCGTGGTCTCGGCAGAGCGGGTTTGG
GAAATCCTTAAGCATATCACCGATGAGGAGTGCTTTATTCTGGGCATGGA
TCCCAAGTATGCGCGTCCCGATTGGATGATCGTGACCGTCCTGCCTGTTC
CACCGTTGGCCGTACGGCCAGCGGTCGTGATGTTTGGTGCTGCCAAGAAT
CAAGATGATTTGACGCACAAGCTGTCCGATATCATCAAGGCAAACAATGA
GCTTCGCAAGACGAGGCCAGTGTGCCGCAGCGCATGTGATCCAGGAGAAC
ATCAGATGCTGCAATTCCACGTCGCCACACTAGTGACAACGATATGCCCG
CATGCCCAGGGCTATGCAAAAGTCGGGAAAACCCCTTAAAGCATCAAGCG
CGACTCAGGGTAAGGAGGTAGATTCGTGCACTTGATGGCAACTGTGCCAC
TTCTCCGCCGTACTGCATCACCCGATCTATCGTCGATAGTCGGTGCGTCA
TGCGTCACTCCGACTGCTCTAACGTACTGGACTGGCCAGGAATCCGAATC
GT
UFO11015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII215-RA | 6736 | CG1554-RA | 361..1439 | 9..1071 | 4935 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11568379..11569286 | 992..90 | 4275 | 99.3 | Minus |
| X | 23542271 | X | 11569886..11569966 | 89..9 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:42 has no hits.
UFO11015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:39 Download gff for
UFO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 353..1402 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:22 Download gff for
UFO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 357..1406 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:22 Download gff for
UFO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 357..1406 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:22 Download gff for
UFO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11568322..11569286 | 90..1041 | 98 | <- | Minus |
| X | 11569886..11569970 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:22 Download gff for
UFO11015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11462355..11463319 | 90..1041 | 98 | <- | Minus |
| arm_X | 11463919..11464003 | 1..89 | 95 | | Minus |
