UFO11016.5prime Sequence
1102 bp (1006 high quality bases) assembled on 2012-02-08
> UFO11016.5prime
CAGTCGACATGCAGTGCGACATACAGACAAGCCGACGCGAATGCCCGATA
GAACCGACCACAGGCATGAATCGTAGGGGTTTGAACGCTGGCAATACGAT
GACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGCGGTCTCCGAGG
GCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCAATCCGGACGGG
AGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTACAACTCGGCCGG
GAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGGCAACCAGTCCA
TCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACACCTCAGTATACC
TCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCTGTTGGTGCGCA
GAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGGCAATTTCAATG
GTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGACTCGGCCAGTTC
AGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGCCAGGCCGGGCA
CTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATTCAATCCGATGC
CGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGATGATGGGCGGG
CCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGGCACAATTCCTA
CTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAAGCGGCTGCAGC
AGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGTTTACCACGGAG
TTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGCCTGAGGACGGA
CCGAAGCGGTACAACATCGGGCGCACGCTCATCCCGCGCTTCTTCCGCAG
CATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGCTGAGCATGCCAA
GAGTCGTTCACACACGTCCATCACGTTGGACTGCAACAGTGCACGTGATC
CCGCAGCACGCAAGCCCTTCTTCAGAGGTCTGCGCGACGCAGAGACTGAT
CTGAGTCATGTACGACGACTAATGCGCATCAGTCATGCAATGACATCAGA
CC
UFO11016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 69..1162 | 9..1087 | 5015 | 98.2 | Plus |
| Chi-RA | 2156 | CG3924-RA | 122..1193 | 31..1087 | 4905 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24032571..24033576 | 1024..27 | 4575 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:45 has no hits.
UFO11016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:40 Download gff for
UFO11016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 65..1176 | 3..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:23 Download gff for
UFO11016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 65..1176 | 3..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:24 Download gff for
UFO11016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 65..1176 | 3..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:24 Download gff for
UFO11016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24032487..24033572 | 31..1098 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:23 Download gff for
UFO11016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19920010..19921095 | 31..1098 | 97 | <- | Minus |
