UFO11017.5prime Sequence
1108 bp (1010 high quality bases) assembled on 2012-02-08
> UFO11017.5prime
CAGTCGACATGCCCATGGAGGAGTTTCACGCTCGCGGCTGGTTCGAGGAG
CCCAAGACGCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTT
GGAGCTGACCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACT
GGGGCGTGCTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTC
GAGTACCGACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCA
TGCAATTAAACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTA
AAAATGGTCATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCG
CAGGAGGAGGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCG
TAAGCAGGAGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTC
TGAACAATGGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTG
CCCTGCTTCCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCT
CAAAACAGCCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGC
TGCATCGCAGCCACTTGGACTACATCATGGTCACATGGATACTCACGAAC
AACGATATACGCAGTCCTCTGGTAGCCGCTGGCAACAACCTGCAAATTCC
GGTCTTTGGTGGGCTCCTACGTGGTTTGGGTGCTTTCTTCATCAAACGCA
AGATTGATCCTGTGGAGGGCAAGAAAGGACGTGCTTTATCGCGCTGCTCT
ACACCTGTATCTGACCCACGCCTTGAAGCAGGCCACAACGTCGAGTTCTT
CATCGAGGGCGGACGACGCGCACTGCAAGCCGTGCATGCCCAAGGCGGCA
TTCTTTCTGTGATTGTGAACGCCTTCATGGACGGCAGCATACCGGACGCA
CTGCTGTACCCGTTTCGTAAACTACGAGCGTCTCGTCGACGAAACTTTGT
GCGCGAACAAAGGCGAGAGAAGATCCCGGATCATCGCAGTCATTTCGCCA
TTGAGCTGAAATCAACTACGCTCATGCCATCGACTTTACGAGCTATCCAT
CTGACTGT
UFO11017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mino-RC | 2903 | CG5508-RC | 240..1275 | 9..1034 | 4880 | 98.7 | Plus |
| mino-RB | 2687 | CG5508-RB | 167..1164 | 47..1034 | 4690 | 98.7 | Plus |
| mino-RE | 3176 | CG5508-RE | 448..1444 | 48..1034 | 4685 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27930202..27931020 | 211..1023 | 3655 | 98.7 | Plus |
| 3R | 32079331 | 3R | 27929979..27930147 | 46..214 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 27929858..27929897 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:48 has no hits.
UFO11017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:40 Download gff for
UFO11017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RC | 235..1275 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:25 Download gff for
UFO11017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RC | 235..1275 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:26 Download gff for
UFO11017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mino-RC | 235..1275 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:26 Download gff for
UFO11017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27929853..27929896 | 1..47 | 91 | -> | Plus |
| 3R | 27929981..27930145 | 48..212 | 100 | -> | Plus |
| 3R | 27930204..27931008 | 213..1011 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:25 Download gff for
UFO11017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23755575..23755618 | 1..47 | 91 | -> | Plus |
| arm_3R | 23755703..23755867 | 48..212 | 100 | -> | Plus |
| arm_3R | 23755926..23756730 | 213..1011 | 99 | == | Plus |
