UFO11018.5prime Sequence
1154 bp (1051 high quality bases) assembled on 2012-02-08
> UFO11018.5prime
CAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACACCGGCAAG
TCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTGCTAAATGC
CGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATTGCTGAATA
CGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACACTCGAGGTGATA
TTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACCGAAAAGCAGGG
TCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCTTCTCATCGAGA
ATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAGTGTGCATGCAG
CTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAACAAGGGTTGGCC
CACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAATAGCGATACAA
CGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCAAAAATCTCGAT
GTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTGCCCGATGAAGA
CTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATCCATTGTAAACC
TCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATTACCACGTGGAA
AGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGCAAAAGACTGAA
TAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGTGGACGAGAAAC
TGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAATCAACCACCTG
AACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCCCTCCATCAGTT
TGATGGCCCCATTGCCTTGCTGGCTCTTCAGGAATCTTTACGCTTATGCA
AAAGCAGAATATCACCTATCCGGATGTGTATGAGAGCTGTACAATATGTT
CTATCCACGGATGTTCCACAACAAGTACAAGGCACGCCTGTTTTACTGCC
GATATCTTTCTGACCTCCACCCAATTTGCCCGAGAATCTGGTGGCGGCAT
TCGTTAAGCGTCTCCCCTCGCCTGTCCTCATCGCGACGAAGATGCTGTAT
ATGGATCGATCGTTGCATCTGCTATTGGAACATACTGGAATGCAATGGAT
CCGC
UFO11018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2875-RC | 1975 | CG2875-RC | 118..1265 | 9..1144 | 5265 | 98 | Plus |
| CG2875-RB | 1710 | CG2875-RB | 118..1265 | 9..1144 | 5265 | 98 | Plus |
| CG2875-RA | 1713 | CG2875-RA | 118..1268 | 9..1144 | 5225 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3572595..3573301 | 852..146 | 3535 | 100 | Minus |
| X | 23542271 | X | 3572318..3572533 | 1064..852 | 870 | 97.7 | Minus |
| X | 23542271 | X | 3573368..3573505 | 146..9 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:50 has no hits.
UFO11018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:41 Download gff for
UFO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 116..1231 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:28 Download gff for
UFO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 118..1233 | 9..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:28 Download gff for
UFO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 118..1233 | 9..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:28 Download gff for
UFO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3572261..3572532 | 853..1114 | 93 | <- | Minus |
| X | 3572595..3573300 | 147..852 | 100 | <- | Minus |
| X | 3573368..3573505 | 9..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:28 Download gff for
UFO11018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3466294..3466565 | 853..1114 | 93 | <- | Minus |
| arm_X | 3466628..3467333 | 147..852 | 100 | <- | Minus |
| arm_X | 3467401..3467538 | 9..146 | 100 | | Minus |
