UFO11019.5prime Sequence
1159 bp (1050 high quality bases) assembled on 2012-02-08
> UFO11019.5prime
CAGTCGACATGGATAATTCCAATGGAATCCACTACATTGAGCTAACCCCA
AATCCCATACGATTTGATGCTGTCAGCCAACTAACCAATGTGTTTTTCGA
TGACTCCAACAAGCAGATATTTGCTGTTCGGTCTGGAGGAGCTACTGGTG
TGGTGGTCAAAGGTCCTGGATCTCCCGACGATGTCGTCATCTCCTTTTGC
ATGAGCGACCGTGGCGGTGCCATAAGGTCCATTAAGTTCTCGCCGGACAA
CCAAATCTTGGCCGTTCAGCGAAAGGAGAATTCCGTGGAGTTCATATGTT
TTCAGGGAGATCAGCCTCTGCTGCAGGACATCATTACCCACCAGGTGAAG
ACTCTGATCCATGGCTTTGTTTGGGTCCACAATCGGGAGGTGGCCCTGAT
TTCGAATACCGGCGTGGAGGTCTACACCGTAGTTCCTGAGAAGCGACAGG
TGCGCTCTGTGAAATCCCTGAGCATTGGCATCAAGTGGTTCGCCTGGTGC
TGCGATGCCAATGTGGCTCTACTGTGCACCAGCGAAGGAAACTCCCTGAT
TCCGGTGCTGGTCAAGCAGAAAGTAATCACCAAGCTGCCCAAAGTGGACT
TGGGCAATCCAAGTCGCGATGTCCAGGAGAGCAAGGTCACCTTAGGCCAA
GTTTACGGCGTGCTGGCTGTGCTTATCCTCCAGTCAAATAGCACCACCGG
ACTGATGGAAGTCGAGGTGCACTTGCTCAATGGACCGGGCTTGGCTCCAC
GCAAGTGCCATGTGCTCCGCTTAAGTCTGCTTGGTCGCTTCGCCATCAAC
ACGGTGGATAATCTGATTGTGGTGCACCATCAAGCTTCGGGCACTTCGCT
GCTATTCGACATCTCCCTGCCCGGGAGAGGTGATCAATGAAATAACCTAT
CATACACCCATACTCCAGGGCGCTCCATCAAACCGTTTGGCCTGAAACTG
CCCTCACTTTCGCCTGATGGACAAATCTTGCAGTGCGAGTTGTTTTCCCC
GCACTGGGTACTGTCCAGCCAAATATTGTATCGATGCCAGTGGGTTGCAT
GTGGTTTTTGAACCTCTGCATTGAACCATGTGCAACTGATTTCGAATCGC
AATTCGAACATAACGATCCTGCTGCAACGCAGCAATGCAAGCAATTCTAT
TAAGTCATT
UFO11019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8270-RB | 2170 | CG8270-RB | 81..1233 | 9..1153 | 5320 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6488928..6489413 | 115..600 | 2415 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6489470..6489862 | 601..993 | 1870 | 99.5 | Plus |
| 3L | 28110227 | 3L | 6488761..6488872 | 9..120 | 545 | 99.1 | Plus |
| 3L | 28110227 | 3L | 6489919..6490031 | 995..1101 | 255 | 92 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:53 has no hits.
UFO11019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:42 Download gff for
UFO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8270-RB | 76..1246 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:31 Download gff for
UFO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8270-RB | 71..1241 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:32 Download gff for
UFO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8270-RB | 71..1241 | 1..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:32 Download gff for
UFO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6488751..6488868 | 1..116 | 96 | -> | Plus |
| 3L | 6488930..6489413 | 117..600 | 99 | -> | Plus |
| 3L | 6489470..6489862 | 601..993 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:31 Download gff for
UFO11019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6481851..6481968 | 1..116 | 96 | -> | Plus |
| arm_3L | 6482030..6482513 | 117..600 | 99 | -> | Plus |
| arm_3L | 6482570..6482962 | 601..993 | 99 | -> | Plus |
