UFO11020.5prime Sequence
1149 bp (1020 high quality bases) assembled on 2012-02-08
> UFO11020.5prime
CAGTCGACATGCGGAAAAGTATTGTTTTCATCGGTTTAATAGCGCTTTTC
CAGAGTTGCTTGGCTGAAACGCCGGAAACGTATCTCCTCAAAACACACAG
TCTTCCCTCGGACCTGAATTTTATGCCCACCCTGGGCAATGGCCACGTGG
GATACACGATCTTCGGAGATGCGATCTTTATGAATGGAGTCTACAACGGA
GCCGGCGGAAACAGCAAGCGTGCTCGCATTCCCAACTGGATAAATATCAG
CACGGAAGCTTGTGATCGGTTCGGTTGTGCCACTGACAGCGATGTGGTAA
ATGGAACCAGCTACGAGATGAATCTACGAGATGGCTACTTCCGGGTTGTC
ACAACATACAGAGGACTAGGGATTTCAGTGGAACAGAGAACCTATCCGCA
CAAGTACTACAATCGTGCTTTAGTCTATGAAGTGGTGGCTAATAGACTTG
CTGGCCGAAACTCAAGGATTAACTCTCCAAAGTTCCTAAGGCTAACACAA
TTCGCTGGTAACTTCAGTGATGCCTTCGACTTTGTGGTGGTCAACAATGG
CAGCTCAGCCAGCGGCAATTACCGCACACTTCGCGGACAAACAAAGGTGG
TTGAGAACGAGCAGTTCCAACCAGATCCTCAGGAGATCTTTGTCCTCTTC
AGTGAATCCTTGGAGCAACCCCTTGAACTGCAGTGGCCCACGTGGCAGGA
TCAATTAAGCCATCGAGTTATCATTGCCATAGACAGAGACGAAAGTGTGA
CACGAAAGGAACTGCAGGATGTGCTTCAGTTGAGCTCCGATAATCTTCTC
CAGAAGCACTCGCAATCGTGGAACAGTTTTTGGGACGATGAGTTCTCCAT
TGAAATCAAGGGTGATGCTCTGGAACTGTCGCAGATTGTAAATGCTGGCA
TATTCTATATAGTAAGTTCCCTTCCGTCACTGGAAACCAATCAGAAAACG
ACTATTCTATGGATTAAGTCCTACTGGCTTGGGGCGTGCATCTGAGCGAT
TACCAGGGCACAACTTCTGGGAACCGAGATCTGATGCTGCCGAATAGTTT
CGCTATTCGCTGATATGCAAAGAAGGTGCTTGCTATCGCACAAAACTGAG
CAGCCAAATATCATGCAATGCCATGGTAAGGAACTGAATCTTGGGAAGG
UFO11020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16965-RC | 2300 | CG16965-RC | 42..1176 | 9..1123 | 5090 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11982414..11982929 | 475..988 | 2485 | 99.2 | Plus |
| 2L | 23513712 | 2L | 11981977..11982354 | 97..474 | 1890 | 100 | Plus |
| 2L | 23513712 | 2L | 11981632..11981723 | 9..100 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:56 has no hits.
UFO11020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:43 Download gff for
UFO11020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RB | 17..1161 | 9..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:33 Download gff for
UFO11020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RC | 42..1186 | 9..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:33 Download gff for
UFO11020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RC | 42..1186 | 9..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:33 Download gff for
UFO11020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11981632..11981723 | 9..100 | 100 | -> | Plus |
| 2L | 11981981..11982354 | 101..474 | 100 | -> | Plus |
| 2L | 11982414..11983093 | 475..1130 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:33 Download gff for
UFO11020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11981632..11981723 | 9..100 | 100 | -> | Plus |
| arm_2L | 11981981..11982354 | 101..474 | 100 | -> | Plus |
| arm_2L | 11982414..11983093 | 475..1130 | 95 | -> | Plus |
