UFO11021.5prime Sequence
1164 bp (1033 high quality bases) assembled on 2012-02-08
> UFO11021.5prime
CAGTCGACATGTGCAGAGCTTGGGTTGTTTTATTCGCTTGGATGCTGACG
GCGGGACGAGGATCGGCCCGCCTTTTGGACGAGGATTGTGGAGTTCCGAT
GCAATTAATACCGAAGATTGTAGGTGGAGTGGATGCGGGGGAACTGAAGA
ATCCGTGGATGGCCCTCATAAAAACCAATGACGAATTTATCTGCGGAGGA
TCGGTAATTACTAACAAATTCGTCTTGACGGCCGCTCATTGTATGTGCAC
CGATGAGGAATGCATTGTAAAGTACACTCAGCTCACAGTTACCTTGGGTG
TGTACCATCTACTGGCGACGGGTGAACACAATCATCCCCACGAGATATAC
AACGTGGAGAGGGTCTACATCCACGATTCCTTCGCGATACAAAACTATCG
CAATGACATAGCGCTTCTTAGGTTGCAAAAAAGTATCGTTTACAAGCCAC
AAATCAAACCGTTATGTATTTTACTGAACGACCAACTCAAGCCGCAAACG
GATCTCATCCAGGAGTTCACAGCAATCGGCTGGGGCGTAACGGGCAATGG
GAAGATGAGTAACAATCTTCAAATGGTCAAGATCTACAGAATAGATAGGA
AAATGTGCGAGGCAGCATTTTGGTACACTTTTGATTACCCAATGTTCTGT
GCCGGCACCGCGGTAGGCAGAGATACCTGCAAAAGGGACTCCGGTGGACC
CTTGTACATACATATGTTGTTCGATGGCATCAAGCGAGCAACGCAGTTGG
GAATCGTCAGCACTGGCACCGAAGATTGCAGAGGTTTCGGTATGTACACC
GATGTAATGGGCCATATCGACTTTATCGAGCGCATTGTTCTGGATGCGGA
CATTGAGTGGTGCTACCCTATATAGACCTACTCGATGCTGGGTGTCTGGG
CAACGACACGTTGAACAGCTGGGATAGAAGTGGTCCCGATGCGATCAGTC
CTTCGAGTGTTGGCTGAAGTCTACAAGGATTCCTTTATAATCTCAAACGG
CGCACTTATCTCGAAAAACTTTCGTGTGACAACGCGCAGTTGATTTCCGA
AAGTTACGCATTAAAGTCAACTGGACAGGCGATGTGCATACTACGCTGTC
CATCTGTTCCAGCATCATCGTTAGCCTGCCAAACGACATAGGCTCTGCTT
AACTTGGGCGAAGA
UFO11021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30091-RA | 1681 | CG30091-RA | 27..1198 | 9..1161 | 5240 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15680906..15681642 | 284..1017 | 3505 | 99.3 | Plus |
| 2R | 25286936 | 2R | 15680571..15680845 | 9..283 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:58 has no hits.
UFO11021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:43 Download gff for
UFO11021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30091-RA | 1..1120 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:35 Download gff for
UFO11021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30091-RA | 19..1146 | 1..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:34 Download gff for
UFO11021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30091-RA | 19..1146 | 1..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:34 Download gff for
UFO11021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15680563..15680845 | 1..283 | 98 | -> | Plus |
| 2R | 15680906..15681642 | 284..1017 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:35 Download gff for
UFO11021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11568068..11568350 | 1..283 | 98 | -> | Plus |
| arm_2R | 11568411..11569147 | 284..1017 | 99 | -> | Plus |
