UFO11022.5prime Sequence
1118 bp (1033 high quality bases) assembled on 2012-02-08
> UFO11022.5prime
CAGTCGACATGAGACTTTGTGTGTTCTTATCATTGTTGGGACTTAATATT
CACTTGGAGGTGCTTGCTAATGGCATCGCAAATCGTTACTTTTTGGAAAA
GCAGCGTTTTTTGTTGGAAATTCTACATCATGTTAACGAACCTTTGATGA
ACGAACAGTGGCGATTATTGGGAAAACAATTGGTGACAGATAAGGAACAG
TATGTGGTCTACAACGAGCAAATGACACGTTTCTATGAAGACTTCAGTTT
GGGAAAACTTTTACATCGAAATGTACGATATAATCCCCTCTATGCCGATC
ATTATCGGCAGATGCTGGGATTATATCAATTTTTCTACAACGCCAGGGAT
TGGTATACCTTATGGCAAAATATAAGCTGGGCCCGAGTTCATGTGCATCC
GTGTATTTTTGTTCAAGCTCTCACTCAATTGATCCTCAAAAGAGAGGACT
ATCAGGCCTTGATTATGCCCAAGATCTATGAATTGTGGCCAGAATCGTAT
CACGATGATGTAACAGTGAGAAAAGCAAGAAATTTCAATTTTGCCAACTG
GATAAGATACGTGAATATGACCGATGTAGAAGAAATCCATCCGCAAAAAT
TGGAACCTTTAAATTTGGAAGGTAATCTTCGAGGTACCATTGAATGGTTT
CAGGCCATGGCTGATGTGAATATTCTAAGGATGAATGAACAGAAAAAGAG
AAATAAGTTAGAACACTTGTTAGAAGATATAGATTGGCAATCGTATTGGT
ATAATCTGAACATGGGAGTGATTTTAACAGCCGAAAATTCAGATCAGTTG
CGCGAATGGTGCTACTATCAGTTGAGTCAAATACTGGCTCGTTATAAACT
TGAATGTTATGGCCAAAAGATGGCTTACAAGAGGCTGACACAAATCGTGC
ATAAACGAGGAATTCCATTTATACTAAAAGATATCAGAGTGGAGCAAAGT
GGGGATACCATTTCATTTCAAAGTATCAGCTACTATGAAGTCGTATATCT
GATGAAACACATTGCTATCGACTGAGACTATTTCCTATGATGACCAATAG
CTGTGATGAGTACGACTATATTTACTGAATTCGACTAATGGATCCGAAGA
ACTTTATACATGCTCTTG
UFO11022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7320-RB | 2023 | CG7320-RB | 8..1012 | 5..996 | 4670 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18201823..18202536 | 206..917 | 3470 | 99.7 | Plus |
| 3L | 28110227 | 3L | 18201635..18201766 | 78..209 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 18201501..18201574 | 5..78 | 355 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:30 has no hits.
UFO11022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:35 Download gff for
UFO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RA | 1..931 | 79..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:11 Download gff for
UFO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RB | 2..1012 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:15 Download gff for
UFO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RB | 2..1012 | 1..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:15 Download gff for
UFO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18201495..18201574 | 1..78 | 96 | -> | Plus |
| 3L | 18201636..18201763 | 79..206 | 100 | -> | Plus |
| 3L | 18201824..18202638 | 207..1005 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:11 Download gff for
UFO11022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18194595..18194674 | 1..78 | 96 | -> | Plus |
| arm_3L | 18194736..18194863 | 79..206 | 100 | -> | Plus |
| arm_3L | 18194924..18195738 | 207..1005 | 97 | -> | Plus |
