UFO11023.5prime Sequence
1100 bp (1009 high quality bases) assembled on 2012-02-08
> UFO11023.5prime
CAGTCGACATGGATCGCCTTTCCATTCTGCTCTTGGTTCTTGGATTCTCC
CGGATCCAGGCTCTTTTCTGTGGTGGGTCAATGGCGAAAGAGTGCGTACA
GCGAAACCGTTGCCGTATTGGTACCGAAACGGGAAGACCAATCATAGATT
TTAGAGGACTTAATAACGGTAATCAGGGATGTGAATCTGGCCAAACCTGC
TGCCCGAAAACGGAAATATTACAATATCCAGTACAGGCTGACAATCAACC
GCTACCTACTGAATGTGGCCACGTGAACCGTATAGGAGTGGGCTTCACCA
TAACTAACGCGAGAGACATCGCACAGAAAGGCGAACTGCCATGGATGGTG
GCCCTGCTCGATTCCAGAAGCCGTCTACCGTTAGGCGGCGGCTCCCTAAT
TACGCGGGATGTGGTGCTTACATCATCTACGAAAACTTTGGAAGTTCCTG
AGAAATATCTTATTGTGAGGGCTGGCGAATGGGACTTTGAAAGCATCACC
GAGGAGCGAGCACATGAGGACGTTGCGATCAGGAAGATCGTACGACATAC
CAATCTCAGTGTCGAAAATGGTGCCAATAATGCGGCCCTTCTGTTCCTCG
CTAGACCGCTAAAACTAGACCATCACATAGGTCTCATTTGTTTGCCGCCG
CCGAATCGAAACTTTATCCATAATCGCTGCATCGTCAGTGGCTGGGGCAA
AAAAACAGCCTTGGACAACAGTTACATGAATATCCTGAAAAAGATCGAGT
TGCCATTGGTGGACAGATCTGTGTGTCAAACGAAACTGCAAGGACCCTAC
GGCAAAGACTTCATTCTCGATAACAGCCTAATATGTGCCGGCGGAGAACC
TGCAAGGATACGTGCAAAGGCGATGGAGTGCCCCACTTGCCTGCCCACTG
CAAGCGATCCTAACCGGTACGAACTGTTGGGAATCGTAAACTTTGGATTC
GGATGTGGAGGGCACTTCCTGCTGCTACACTGATGTTTCCCAATTCGAGC
TGGATTGATATGATTCAGCGAGGCAGTCACTATCTCCTCAGGTGGAAATG
TAGCCAATCAACCTGCCTCCACTCGATCGCTTAATATAACCAATATATAG
UFO11023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4793-RD | 2832 | CG4793-RD | 16..1116 | 9..1097 | 4970 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15923681..15924460 | 219..993 | 3650 | 99.4 | Plus |
| 2L | 23513712 | 2L | 15923410..15923619 | 9..218 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 15837072..15837133 | 697..636 | 205 | 88.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:05:32 has no hits.
UFO11023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:36 Download gff for
UFO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4793-RD | 14..1024 | 6..1010 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:14 Download gff for
UFO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4793-RD | 14..1024 | 6..1010 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:16 Download gff for
UFO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4793-RD | 14..1024 | 6..1010 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:16 Download gff for
UFO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15923408..15923619 | 6..218 | 99 | -> | Plus |
| 2L | 15923681..15924479 | 219..1010 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:14 Download gff for
UFO11023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15923408..15923619 | 6..218 | 99 | -> | Plus |
| arm_2L | 15923681..15924479 | 219..1010 | 99 | == | Plus |
