UFO11024.5prime Sequence
1048 bp (1005 high quality bases) assembled on 2012-02-08
> UFO11024.5prime
CAGTCGACATGTCTGTGACCCAGACGAAACAAATCAAGTTCTACAACCCA
TCGAGTTCCGCTAGCTCCGACAGCGATGACCGTTCACTCTCGGATGTCAC
AGAGCAACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGCCCG
GGGATCTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAAGCA
TCGTTGGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCACATC
CATTGGCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATACGCG
CAAATAACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAATTGT
GCTGGGCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAGTGC
CTCTGGCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACGTTC
CATGGGTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAATGAG
AAACAGCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCCGGA
TGCCTTCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAAGGAGG
GCCGAAAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATGGTCGTGAG
AGCCAAACGAAAACCATGTACGGGGCCAATGTGATCATCTTCGAGGGTAT
TCTTACCTTTCATAGTCCTGAAGTACTTAAATTGCTAGACATGAAGATAT
TTGTGGACACAGATCCCGATATTCGTCTGGCCAGGCGGTTAAGAAGGGAC
ATCTCTCAGCGCGGACGAGACCTCAAGGGCGTGCTGAAGCAATACCTTAA
TATGGTTAAGCCCTCTATTGCAATTACATAGCTCCAACAATGGCCCATGC
AGATATCATTGTTCCTCGTGGAGGCGACAACAAGGTGGCCATCCATCTCA
TTGTCAGCACGTGCACACACAGCTGCACTGCGCGGATTTAAGCTGCGCGA
AACTCTGGCCAACTCTACAAGACAGCAATGCCACATCCTCTGCACTTG
UFO11024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k01209-RA | 1881 | CG4798-RA | 97..1149 | 3..1048 | 5060 | 99.1 | Plus |
| l(2)k01209-RD | 2284 | CG4798-RD | 567..1552 | 70..1048 | 4725 | 99.1 | Plus |
| l(2)k01209-RC | 2380 | CG4798-RC | 663..1648 | 70..1048 | 4725 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17423653..17423964 | 71..382 | 1560 | 100 | Plus |
| 2R | 25286936 | 2R | 17424196..17424506 | 487..797 | 1555 | 100 | Plus |
| 2R | 25286936 | 2R | 17424571..17424755 | 795..977 | 825 | 98.9 | Plus |
| 2R | 25286936 | 2R | 17424026..17424134 | 380..488 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 17420503..17420573 | 3..73 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:05:35 has no hits.
UFO11024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:37 Download gff for
UFO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k01209-RD | 68..140 | 1..72 | 95 | -- | Plus |
| l(2)k01209-RD | 910..1893 | 73..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:16 Download gff for
UFO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k01209-RA | 94..1149 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:18 Download gff for
UFO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k01209-RA | 94..1149 | 1..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:18 Download gff for
UFO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17424819..17424890 | 981..1048 | 93 | | Plus |
| 2R | 17423656..17423963 | 74..381 | 100 | -> | Plus |
| 2R | 17424028..17424134 | 382..488 | 100 | -> | Plus |
| 2R | 17420500..17420573 | 1..73 | 95 | -> | Plus |
| 2R | 17424198..17424505 | 489..796 | 100 | -> | Plus |
| 2R | 17424573..17424759 | 797..980 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:16 Download gff for
UFO11024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13311161..13311468 | 74..381 | 100 | -> | Plus |
| arm_2R | 13308005..13308078 | 1..73 | 95 | -> | Plus |
| arm_2R | 13311533..13311639 | 382..488 | 100 | -> | Plus |
| arm_2R | 13311703..13312010 | 489..796 | 100 | -> | Plus |
| arm_2R | 13312078..13312264 | 797..980 | 98 | -> | Plus |
| arm_2R | 13312324..13312395 | 981..1048 | 93 | | Plus |
