Clone UFO11025 Report

Search the DGRC for UFO11025

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:110
Well:25
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG42668-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11025.5prime Sequence

1065 bp (994 high quality bases) assembled on 2012-02-08

> UFO11025.5prime
CAGTCGACATGAATCTCCTACAAAGAATCGCAAATTGGGCCTCAGACAAT
CGGGATGGCAATGTGGCAGATAAGTCAGCTGCTGATGCCGCTAAACTCAA
CAGGAAGGAATCGTACAAGGCGCAGAGGAAGAACTACAGGCGGGAGAAGA
AACGAGTGGCCAGTGAGCTGATGAACTCCCTGCAGGATCCTGCAGTTATA
GTGCTGGCAGATTGGCTAAAGGTTCGTGGCACACTAAAGTCCTGGACGAA
ACTGTGGTGCGTTCTGAAGCCTGGCCTACTGCTGATTTACAAGAGCCAAA
AGACGAAGAGCAGCCACTGGGTGGGCACGGTGATGCTCACCTCATGCCAG
GTGATCGAGCGCCCGAGCAAAAAGGATGGCTTCTGTTTCAAGCTCTTCCA
TCCCCTGGAACAGTCCATTTGGGCGCCGCGCGGTCCTGACAAGGAAACCA
TTGGTGCCGTGGTCCAGCCGTTGCCAACCGCTTACCTGATCTTTCGAGCT
CCCAGTCAGGCGGCCGGCAAGTGCTGGATGGATGCCCTGGAGCTGTCCCT
GAGATGTTCGGCCCTCCTGTTGCGTTCGAATAGCAGTACGGGCACTGCTC
CAACGTCCAGCTATATCGGCGAACCGCTGCCCGTCTCCCATGAGACGCAG
TGGTCGGAGGCGGACTACGAGAAGCACTTCAACGATCACGATTTGGACGC
TGACAGCCAGAATGAAGCACCCAATGCCGTCATGTCTGGTCTGGAGTCGG
AATCCGAATCGGATCCGGCAGAGCCGGCGCAGATGATGTCGTTGATCAGC
AGTGTGTGGAGACCTCGTATGTGCCCTTCACTGAGGAGGAGTTTGGCGAG
CAAGGGGAGCAGTGCGACCGGGAATGGATTTGAGCAAGGTAGTACTACCC
ACATTTATCCTGGAGCCCCGCTCATTCCTGGACAGTTATCCGACTCGTAT
TACATGCGACTTGTCTAGCTCGATACTCCTATGGAGTGTACGACATGACT
GCGCTAGCATCAGTTCGACTGCTCGACCGCGACGCATACGATGCGACTGA
GTACCCCCGTTTGAT

UFO11025.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42668-RF 3410 CG5077-RF 266..1226 8..963 4680 99.5 Plus
CG42668-RH 3464 CG5077-RH 266..1121 8..862 4255 99.9 Plus
CG42668-RN 3324 CG42668-RN 143..981 25..862 4170 99.9 Plus
CG42668-RH 3464 CG5077-RH 1176..1280 862..963 450 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20320214..20320451 453..690 1190 100 Plus
3R 32079331 3R 20319767..20320002 220..455 1180 100 Plus
3R 32079331 3R 20321475..20321636 690..850 760 99.4 Plus
3R 32079331 3R 20319562..20319712 73..223 755 100 Plus
3R 32079331 3R 20321768..20321860 862..953 415 98.9 Plus
3R 32079331 3R 20318977..20319026 25..74 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:06:08 has no hits.

UFO11025.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:47 Download gff for UFO11025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42668-RF 171..1142 1..971 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:42 Download gff for UFO11025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42668-RF 260..1231 1..971 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:41 Download gff for UFO11025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42668-RF 260..1231 1..971 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:41 Download gff for UFO11025.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20318977..20319030 25..78 96 -> Plus
3R 20319568..20319710 79..221 100 -> Plus
3R 20319769..20320000 222..453 100 -> Plus
3R 20320215..20320451 454..690 100 -> Plus
3R 20321476..20321644 691..861 95 -> Plus
3R 20321768..20321876 862..968 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:42 Download gff for UFO11025.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16147198..16147366 691..861 95 -> Plus
arm_3R 16147490..16147598 862..968 94 -> Plus
arm_3R 16144699..16144752 25..78 96 -> Plus
arm_3R 16145290..16145432 79..221 100 -> Plus
arm_3R 16145491..16145722 222..453 100 -> Plus
arm_3R 16145937..16146173 454..690 100 -> Plus