UFO11025.5prime Sequence
1065 bp (994 high quality bases) assembled on 2012-02-08
> UFO11025.5prime
CAGTCGACATGAATCTCCTACAAAGAATCGCAAATTGGGCCTCAGACAAT
CGGGATGGCAATGTGGCAGATAAGTCAGCTGCTGATGCCGCTAAACTCAA
CAGGAAGGAATCGTACAAGGCGCAGAGGAAGAACTACAGGCGGGAGAAGA
AACGAGTGGCCAGTGAGCTGATGAACTCCCTGCAGGATCCTGCAGTTATA
GTGCTGGCAGATTGGCTAAAGGTTCGTGGCACACTAAAGTCCTGGACGAA
ACTGTGGTGCGTTCTGAAGCCTGGCCTACTGCTGATTTACAAGAGCCAAA
AGACGAAGAGCAGCCACTGGGTGGGCACGGTGATGCTCACCTCATGCCAG
GTGATCGAGCGCCCGAGCAAAAAGGATGGCTTCTGTTTCAAGCTCTTCCA
TCCCCTGGAACAGTCCATTTGGGCGCCGCGCGGTCCTGACAAGGAAACCA
TTGGTGCCGTGGTCCAGCCGTTGCCAACCGCTTACCTGATCTTTCGAGCT
CCCAGTCAGGCGGCCGGCAAGTGCTGGATGGATGCCCTGGAGCTGTCCCT
GAGATGTTCGGCCCTCCTGTTGCGTTCGAATAGCAGTACGGGCACTGCTC
CAACGTCCAGCTATATCGGCGAACCGCTGCCCGTCTCCCATGAGACGCAG
TGGTCGGAGGCGGACTACGAGAAGCACTTCAACGATCACGATTTGGACGC
TGACAGCCAGAATGAAGCACCCAATGCCGTCATGTCTGGTCTGGAGTCGG
AATCCGAATCGGATCCGGCAGAGCCGGCGCAGATGATGTCGTTGATCAGC
AGTGTGTGGAGACCTCGTATGTGCCCTTCACTGAGGAGGAGTTTGGCGAG
CAAGGGGAGCAGTGCGACCGGGAATGGATTTGAGCAAGGTAGTACTACCC
ACATTTATCCTGGAGCCCCGCTCATTCCTGGACAGTTATCCGACTCGTAT
TACATGCGACTTGTCTAGCTCGATACTCCTATGGAGTGTACGACATGACT
GCGCTAGCATCAGTTCGACTGCTCGACCGCGACGCATACGATGCGACTGA
GTACCCCCGTTTGAT
UFO11025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42668-RF | 3410 | CG5077-RF | 266..1226 | 8..963 | 4680 | 99.5 | Plus |
CG42668-RH | 3464 | CG5077-RH | 266..1121 | 8..862 | 4255 | 99.9 | Plus |
CG42668-RN | 3324 | CG42668-RN | 143..981 | 25..862 | 4170 | 99.9 | Plus |
CG42668-RH | 3464 | CG5077-RH | 1176..1280 | 862..963 | 450 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20320214..20320451 | 453..690 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 20319767..20320002 | 220..455 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 20321475..20321636 | 690..850 | 760 | 99.4 | Plus |
3R | 32079331 | 3R | 20319562..20319712 | 73..223 | 755 | 100 | Plus |
3R | 32079331 | 3R | 20321768..20321860 | 862..953 | 415 | 98.9 | Plus |
3R | 32079331 | 3R | 20318977..20319026 | 25..74 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:06:08 has no hits.
UFO11025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:47 Download gff for
UFO11025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42668-RF | 171..1142 | 1..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:42 Download gff for
UFO11025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42668-RF | 260..1231 | 1..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:41 Download gff for
UFO11025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42668-RF | 260..1231 | 1..971 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:41 Download gff for
UFO11025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20318977..20319030 | 25..78 | 96 | -> | Plus |
3R | 20319568..20319710 | 79..221 | 100 | -> | Plus |
3R | 20319769..20320000 | 222..453 | 100 | -> | Plus |
3R | 20320215..20320451 | 454..690 | 100 | -> | Plus |
3R | 20321476..20321644 | 691..861 | 95 | -> | Plus |
3R | 20321768..20321876 | 862..968 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:42 Download gff for
UFO11025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16147198..16147366 | 691..861 | 95 | -> | Plus |
arm_3R | 16147490..16147598 | 862..968 | 94 | -> | Plus |
arm_3R | 16144699..16144752 | 25..78 | 96 | -> | Plus |
arm_3R | 16145290..16145432 | 79..221 | 100 | -> | Plus |
arm_3R | 16145491..16145722 | 222..453 | 100 | -> | Plus |
arm_3R | 16145937..16146173 | 454..690 | 100 | -> | Plus |