UFO11026.5prime Sequence
1137 bp (1026 high quality bases) assembled on 2012-02-08
> UFO11026.5prime
CAGTCGACATGGAGCCAAATCATTATTACTGCCGGAGCGCCATGCAGCAG
AATCCCTCGACTTCCATTCCCCAACATGCGTCGAACAAACTCAACTATGG
GATGAACGCTGGCCAGGATTATGTGACATGTAGCTCCGGCCAATCGCAAT
CGGGCTACAGCTCCAAGGACTTGGTTCCGCGCAGTGGGAACAGCAAAACG
CTCGGCGGGAATGGCAACATGGGGAGTCCGTACGGAGGATCTGTGTGCAG
CAACAGTGGCCAATGCAGCAAGAATACTGCCAACGCTGGGAACTATATCA
ACATAATGACTGTTCCACTGGGAACACTGCAGTATAATCGAAAAAAGCTA
TCTACACAAGACTACGAATCGCATTTATATTACAACACTACGGATGTGAA
GTGTCGCGATGATTACTATATAGCCAACAATGCCGCAGCAGCAATACCGC
AGCACCAAGCTCATCAACCGCATCAGCAGCCGCATCAGCACCAACATCCG
CAGCATCAGCAGCAGCATCAGCAACACCAGCAACACCAACAGCACCAGCA
ACATCAGCAACATCTGCACCAGCAGCAGCAGCAACAGGCAAACTTTCTCC
ACATCCAACAATCGCTACAACACAACCACCAATTGAGCCACCCAGAACCA
ATCCATCAGTTGCCCCAATTACAGGGCACGGTGGCCGATCCACCAGATGC
CTTCGACAACTGTGCGATCTTCCCGAGCGCCGGCGGCAGCAGCAACGGAA
GTGGACGCGTGGCAGCCACTCAAACCCATCAGAACCCATCCGGTGTGGTC
ACGTGCGACCAGCAGGTACCCGTGTCCCTGGGCTCGGTGAATATGCCCGT
TCCCCCAATCATGTATACCGTGCATCGTGTGGTGACCACAGCTCAGATCC
AAACGGCAGCGGGCAGCACCTTCGCTCGTCGGCTAGTGTGTCAAGTGTGT
CAGCACTGCCAGAATGATGTGACTGCCTGTCGCCGCACAGTGTCTCGCAT
GCCGCCTCTGAAATGCTTCCTGTCTGGTGGATTACCCGACATGGGCGCCA
ACATGATGACATGCAAGTGCACTTTGTTCCCTTCGAACTGAAGAAGCCAT
TCGGATGCTCACCAATTTCTGAACATGCCCAACTTCC
UFO11026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bili-RH | 4154 | CG11848-RH | 613..1753 | 7..1129 | 5130 | 97.6 | Plus |
| Bili-RG | 3901 | CG11848-RG | 360..1500 | 7..1129 | 5130 | 97.6 | Plus |
| Bili-RF | 3781 | CG11848-RF | 240..1380 | 7..1129 | 5130 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25133016..25133745 | 368..1083 | 2970 | 97 | Plus |
| Y | 3667352 | Y | 3050664..3051100 | 507..942 | 1880 | 95.9 | Plus |
| 3R | 32079331 | 3R | 25132593..25132953 | 7..367 | 1805 | 100 | Plus |
| Y | 3667352 | Y | 3050518..3050664 | 172..318 | 630 | 95.2 | Plus |
| Y | 3667352 | Y | 3051159..3051216 | 1001..1056 | 190 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:06:10 has no hits.
UFO11026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:48 Download gff for
UFO11026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bili-RD | 187..1341 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:45 Download gff for
UFO11026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bili-RE | 298..1452 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:43 Download gff for
UFO11026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bili-RF | 234..1388 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:43 Download gff for
UFO11026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25132589..25132953 | 1..367 | 98 | -> | Plus |
| 3R | 25133016..25133739 | 368..1077 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:45 Download gff for
UFO11026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20958311..20958675 | 1..367 | 98 | -> | Plus |
| arm_3R | 20958738..20959461 | 368..1077 | 97 | == | Plus |
