UFO11027.5prime Sequence
1157 bp (1041 high quality bases) assembled on 2012-02-08
> UFO11027.5prime
CAGTCGACATGTCACTTGCCTCGAGGACGAGTGTTAAGTCAGGCGGCAGC
GAAGTGGACTTAAGGCAACGGAATGCCAGCATCCGGAACCTCTTCGCCCC
CTCGTCGGCTGAGTTGGCCAAAAAAAAGGAAGCTCGTCAGAGGAGCCGCA
GCCAGAGCAGCTTTTCGCTCCAGAGGGCCAGCAGCCAGGATGACGGGATT
GGTAATGGTATGGGAATGGGGCTTGGGAGCAAGATGGGCAGCCAGATGGG
CCTGCCCAACTCCAAGAGCTTCGATGATTACGCTCTGGGCATAAATCAAT
TGCCAATGACTGCGAATCAATCGGCAGTGAGACAATACAATGGCCAGGAC
CATAACGTGCTGGGCTCAAGTCCCTATGCACCGGCTTCTACAAGGGCAAC
GGCATTGGTAATTCCCAGGACATCGCACAATGGCTGCCATCAGAGTGCAT
TTGAATTGGCAATGAGCCGGACTCCATCGGAGCACAAAAACTGGAAGTCG
ACGAGCCAGCTGGAAAATTTTATTAACAGCAACGAGAAGCTGCAGCAGGA
GCAGTGGCAGCAGCACCAGCAGCAGGACACTTCTGTTGACTTTGGTAATG
AAATGACCTGGGGCAAATCTGCTGAGAAATCGCTGCCATTGAATCACCTG
GTGCAAGAAGAAGGATTTTCCCGAGACGACCAGTGGGATTTGGACTTTCA
GACGGAGCAGCGCGAAAGTTTGCAGAGCCAAAGCTATCGACCGGCGGTCG
CAGCGGCAGCTCAATCGACGCCGTTGGCACAGCGCCTTCAGCGCTTTCGA
TATCGCCAGCAATTGCAGTTGCAGGAAGAGCCGCATCAGCAACAGCAACA
GCAACAGCAACAGCAGCAGCAACACAATCGACTGCTGATATCGACGTTTA
CGATAGCCCCTTTAACGGCCAGTTATCAGCTGAACGATAGGCGTAGCCAT
TGGCGGAGGGGGAACGTCGAGGGCCCATTGGCGGGAGAGCTCCAGTTGGA
AGCTGATACTCACGGAGCAGGAGGAGCTGCGCCGGATCGAGTGCTATATT
CCAAACTCGGAACCGGAGAAAGGAGGCAGCGCCCCGAACGCCTGGGTTGG
GGATCAAGCCCCGCATTGGACACATTCGCACCGCCCTACAAGATCCACAG
AATCAAC
UFO11027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31145-RD | 3519 | CG31145-RD | 482..1636 | 9..1156 | 5160 | 97.2 | Plus |
| CG31145-RC | 4524 | CG31145-RC | 482..1636 | 9..1156 | 5160 | 97.2 | Plus |
| CG31145-RB | 2595 | CG31145-RB | 276..708 | 731..1156 | 1550 | 92.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23631486..23632186 | 733..33 | 3505 | 100 | Minus |
| 3R | 32079331 | 3R | 23627100..23627462 | 1087..732 | 1235 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:06:13 has no hits.
UFO11027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:48 Download gff for
UFO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RD | 473..1560 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:47 Download gff for
UFO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 476..1563 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:45 Download gff for
UFO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 476..1563 | 1..1083 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:45 Download gff for
UFO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23627104..23627460 | 734..1083 | 96 | <- | Minus |
| 3R | 23631486..23632186 | 33..733 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:47 Download gff for
UFO11027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19452826..19453182 | 734..1083 | 96 | <- | Minus |
| arm_3R | 19457208..19457908 | 33..733 | 100 | <- | Minus |
