UFO11029.5prime Sequence
1122 bp (1027 high quality bases) assembled on 2012-02-08
> UFO11029.5prime
CAGTCGACATGCGTCTTCATTGTGATAGGATTTGTTCACTGGATCCTGGT
GCTAACCTTGCTGCACGAATGGTTTCTGGTCTTGGTAAACGAGCACTCAT
CTGCATTGCTCCTAGCCTTTGTATTTGGCATTTTCCTACTTTTCCTGTTT
GCCCTAAGTATGCCGCTAAGGAAAATGTCCTGTGTCAACTGGCTGATTAC
GTTTATTATCTTTCTCTCAGTGTGCTGATCATATCATCGGGAGTACTTTA
TATGCTTGCCGGATTTCTGATTGTCAGCCTTGCATTTGTGTTATGTACAC
TTATAGCTGCTTTAATGGCGTATGACCTCACAGGCACCGGACTCTACCTA
TATGCCCTTGCAACTGGCACTTACTCACTGAGCATATACTCCCTGGTATT
GTATGTGGTTCTCGACGTGATCTGGGGATTTTATCTCTTCGCATTCTGTA
TCGGCTGTGTGGTGATGATGTTCCTGATGTATCATGTGCAGTGCATCATG
GGCGGAAGAAGGGCCTCGACCAAGTTGTTCGATGACAAGTTCGCCGCCCT
GCTGCTGTTCCACGAGTTCATAGGCCTCTTTGTGCTAACCCTCTACTGGC
GGCCCATAATGCATCGCCTGCAGTTGAACAAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGT
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGAAGCCATCACAAACGGCATGAT
GACCTGATCGCAGCGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCC
ATGTGAAACGGGGCGAGAGTGTCCATATGCCACGTTAAATCAACTGTGAA
CTCACCCAGATGCTGAAACGAAAACAATTTCTCATATCCTTAAGAATGCA
GTTCACGTAACCGCCACTTGCA
UFO11029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32391-RB | 748 | CG32391-RB | 91..710 | 9..628 | 3100 | 100 | Plus |
CG32391-RA | 751 | CG32391-RA | 91..713 | 9..628 | 2725 | 95.4 | Plus |
CG14823-RA | 2098 | CG14823-RA | 884..1042 | 628..470 | 795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7068249..7068407 | 628..470 | 795 | 100 | Minus |
3L | 28110227 | 3L | 7068471..7068621 | 470..320 | 755 | 100 | Minus |
3L | 28110227 | 3L | 7068854..7068998 | 210..66 | 725 | 100 | Minus |
3L | 28110227 | 3L | 7068674..7068783 | 320..211 | 550 | 100 | Minus |
3L | 28110227 | 3L | 7069051..7069107 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:06:16 has no hits.
UFO11029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:49 Download gff for
UFO11029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32391-RB | 87..714 | 2..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:50 Download gff for
UFO11029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32391-RB | 87..714 | 2..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:46 Download gff for
UFO11029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32391-RB | 87..714 | 2..635 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:46 Download gff for
UFO11029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7068241..7068406 | 471..635 | 98 | <- | Minus |
3L | 7068471..7068620 | 321..470 | 100 | <- | Minus |
3L | 7068674..7068783 | 211..320 | 100 | <- | Minus |
3L | 7068854..7068998 | 66..210 | 100 | <- | Minus |
3L | 7069051..7069111 | 2..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:50 Download gff for
UFO11029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7061341..7061506 | 471..635 | 98 | <- | Minus |
arm_3L | 7061571..7061720 | 321..470 | 100 | <- | Minus |
arm_3L | 7061774..7061883 | 211..320 | 100 | <- | Minus |
arm_3L | 7061954..7062098 | 66..210 | 100 | <- | Minus |
arm_3L | 7062151..7062211 | 2..65 | 93 | | Minus |