UFO11033.5prime Sequence
1157 bp (1044 high quality bases) assembled on 2012-02-08
> UFO11033.5prime
CAGTCGACATGATTAGATCCTGTCGAGCTCTGATCTCCCAGTGCGGATTA
CACCTAAGACGATGTTCTCTTGCAAAGGCAGCAAGTAATTTGAAAAAAGA
TGATGTCGAAGAAATGGAAACACCAGCGAATAGACAGAGGGTTGAGCTGC
CACCGAATCCCGAGGAAAAACTAAGTAAGCGCTATCTTGCGTTCCGGGAA
AAGCTGCGATCGGAGGCGCCGCTAGAACCACTGCCCGAGTGTGCACCACA
TCCGGCCCACGAAAAGGAGCCACTTAAACCGTGGCCCAATAATACCAATC
CGTATACCGGGGAAATCGGTGGACAAGCGGGACCAGAACCCACGCGCTAT
GGCGACTGGGAGCGCAAGGGACGAGTCACGGATTTCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGATATATGTGTAGAAACTGCCGGAAATCGTCG
TGGTATTCCCTCAGAGCGATGAAACGTTCAGTTTGCTCATGAAACGGTGT
AACAAGGGTGACCACTATTCCATATCACAGCTCACGTCTTTCATTGCCAT
ACGAAATCGATGACATCATCAGGCGGGCAGATGTATAGCCGATAACCTGG
TGCTTATTTCTTACGGTTTAAAGGCCGTATATCCAGCGTGAACGGGCTCT
GTATAGG
UFO11033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15283-RB | 641 | CG15283-RB | 63..440 | 9..386 | 1890 | 100 | Plus |
| Sirup-RC | 727 | CG7224-RC | 460..598 | 248..386 | 335 | 82.7 | Plus |
| Sirup-RA | 650 | CG7224-RA | 383..521 | 248..386 | 335 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14450483..14450860 | 386..9 | 1890 | 100 | Minus |
| 2L | 23513712 | 2L | 7999409..7999547 | 248..386 | 335 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:06:24 has no hits.
UFO11033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:51 Download gff for
UFO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15283-RB | 63..445 | 9..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:55 Download gff for
UFO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15283-RB | 63..445 | 9..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:53 Download gff for
UFO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15283-RB | 63..445 | 9..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:53 Download gff for
UFO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14450483..14450860 | 9..386 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:55 Download gff for
UFO11033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14450483..14450860 | 9..386 | 100 | | Minus |
