UFO11035.5prime Sequence
1128 bp (1022 high quality bases) assembled on 2012-02-08
> UFO11035.5prime
CAGTCGACATGTTTCCTGTTGCACGAATCTTAGGCTCGGCATCGTGCAAC
AGGCTATTTCAACCTCAGGTGCTATGTCAAGAAAGAGTTTGTTGGCCTTC
CAATGAGTTGCACAGAAATTTACCAAGGCATAGAAACTTTTACCACGGTA
GAAACATTTTCCACCCAAGGTCGAATAATAATTTAAACGAATTTCCTGCT
AAACGTCAATTCACTGACAAATTTTCCGAGAAGGGCAGAGGCGAGGAACT
TAACTATGTTCTCAAACTTGCCTCAGAGCAATTTATGAAGATAAAAAAGA
ACAGGGTTAAAGAAATCGCCAATGATATCGTCAAATTGAAAGAGGAGATC
AAGATTTTGGAATCCAAAACTAGCCACAAATCAAGGAAACACAAGGAGAA
TCTGCTAAAGGAATTGAAAGCTCTGAAGGATTTGTTGGAGCAATTCAAAA
AGAGTCTCGAAAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTTCTCATAAACCC
TTTAGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTGCGATATAT
GTGTAGAAACTGCGGAAATCGTCGTGTATTCACTCAGAGCGATGAAACGT
TTCAGTTGCTCATGAAACGGTGTAACAAGGTGAACACTATCCAAATATCA
CCCAGGCTCACACGTCTTTTCAATTGCC
UFO11035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42560-RA | 880 | CG42560-RA | 100..556 | 8..464 | 2285 | 100 | Plus |
| CG42559-RC | 942 | CG42559-RC | 100..556 | 8..464 | 2285 | 100 | Plus |
| CG42559-RB | 939 | CG42559-RB | 100..556 | 8..464 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23600061..23600255 | 464..270 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 23600439..23600550 | 202..91 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 23600605..23600688 | 91..8 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 23600313..23600380 | 270..203 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:06:03 has no hits.
UFO11035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:45 Download gff for
UFO11035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42559-RA | 93..562 | 1..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:38 Download gff for
UFO11035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42559-RB | 93..562 | 1..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:37 Download gff for
UFO11035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42559-RB | 93..562 | 1..471 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:37 Download gff for
UFO11035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23600061..23600255 | 270..464 | 100 | <- | Minus |
| 2R | 23600314..23600380 | 203..269 | 100 | <- | Minus |
| 2R | 23600439..23600549 | 92..202 | 100 | <- | Minus |
| 2R | 23600605..23600691 | 1..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:38 Download gff for
UFO11035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19487584..19487778 | 270..464 | 100 | <- | Minus |
| arm_2R | 19487837..19487903 | 203..269 | 100 | <- | Minus |
| arm_2R | 19487962..19488072 | 92..202 | 100 | <- | Minus |
| arm_2R | 19488128..19488214 | 1..91 | 95 | | Minus |
