UFO11036.5prime Sequence
1056 bp (1012 high quality bases) assembled on 2012-02-08
> UFO11036.5prime
CAGTCGACATGAAGGTGATCGCAGCCGTTTTGCTGTGCTTATTGATTATC
CGCACGGCCCATGGACAGTACGTGAGTTGCCGGAATCCCAACCAGCGGAC
TGGATATTGCGTGAACATCCCCTTGTGTGTGCCACTGAATTCCGTGCTGG
CGAAGAGTAATCCTACAGACTCCGAGATGCGGTTCATCCGAGAATCCCGT
TGCCTCGTATCTGACCAGAGCGATCTGCCATTCGTCTGCTGCACTCCGGA
TACGGACTACAACACGACGCGTGCTAGACCTAACGACGAAGTGATACATT
CCACTTTGCTTCCCGATCGGTCCATCTGTGGGGGCGATATAGCGTACAAC
CAGATCACGAAAGGCAACGAAACCGTTCTCACTGAATTCGCCTGGATGGT
GCTGTTAGAGTACCGTCCTCATGATGGACAACAATTGAGAACGTACTGCG
CGGGATCACTGATCAATAATCGATATGTTGTAACAGCGGCTCACTGCGTG
TCGGCTGCTACTAGGGCCCGCAAAGGAGATGTAGTCTCTGTGAGATTGGG
CGAGCATAACACCAGTGCCGTGGTGGATTGCCTCAATGGAAGGTGCCTAC
CGGAACCTGTGCAAATCGCGGTCGAGGAGATCCGCATACATGAAAGCTTC
GGTACCCGATTGTTTTGGAACGACATTGCTCTGATCCGTTTGGCGAGAGA
GGTTGCCTATTCGCCCAGCATTCGACCTGTTTGCTTGCCCTCGACTGTGG
GTCTGCAAAACTGGCAATCCGGCCAGGCGTTTACCGTGGCAGGATGGGGT
AGAACCCTCACCAGCGAAAGCAGTCCCGTCAAGATGAAATTGAGGGTAAC
GTACGTGAGCCTGTCTGTGTCGTCGCAGTATGCTAGCATAGTGGTCCTGG
GTGACTCCCACTTGTGCGCCGACGTAGAAGTCGGGTGATAGCTGCGATGG
GGACTCAGCGACCACTGATGGCATTCCACGAGGCGTTTGGGTCTGGGGGC
ATGTGTCCTTTGGCTGAACTGGCGCTCCGATTCTGGCCCAGCTGTCTACC
AAAATG
UFO11036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11313-RC | 1213 | CG11313-RC | 20..1079 | 9..1056 | 4830 | 97.8 | Plus |
| CG11313-RD | 1222 | CG11313-RD | 20..1088 | 9..1056 | 4730 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30730569..30731031 | 532..70 | 2300 | 99.8 | Minus |
| 3R | 32079331 | 3R | 30729971..30730506 | 1056..533 | 1920 | 95.7 | Minus |
| 3R | 32079331 | 3R | 30731086..30731146 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:06:05 has no hits.
UFO11036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:46 Download gff for
UFO11036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RB | 203..1270 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:39 Download gff for
UFO11036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RC | 12..1079 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:39 Download gff for
UFO11036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RC | 12..1079 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:39 Download gff for
UFO11036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30729971..30730506 | 533..1056 | 95 | <- | Minus |
| 3R | 30730569..30731031 | 70..532 | 99 | <- | Minus |
| 3R | 30731086..30731150 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:39 Download gff for
UFO11036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26555693..26556228 | 533..1056 | 95 | <- | Minus |
| arm_3R | 26556291..26556753 | 70..532 | 99 | <- | Minus |
| arm_3R | 26556808..26556872 | 1..69 | 94 | | Minus |
