UFO11037.5prime Sequence
1057 bp (960 high quality bases) assembled on 2012-02-08
> UFO11037.5prime
CAGTCGACATGGCCTGCAAAAAGAAAACCAAACTGTGGGAACCAATGACC
AAGGATGAATTGAAGTCCACCACACAGGCGATGCTCGAGGAGGGCGCCAG
GGGTTTAAGGACGATTTCTACGCAGCAGAAAAAGCTGGTCAACTTTCAGT
CGTTCAACATGGATGATCCCCGTTACGGCATTTCCCTAATCGAGGACAAC
ATGGAACCGCCCATGTTGTCGAGCTACACAAGGCAATACTCCCAGCCGTA
TCCAAATCGTTGTAAGCCCTTTGTTCAAAAGACGGAAACACCAGATCCCA
TATTCAATCGAAGGCCGAAAAACGATTTTGAGTTTACCACAGGACTGGAT
TTTAAGTTTCTTGATGATCACATGCACAATCTTTCCGAATCACGCAAGAA
AGTCAACTTCTTCCGGCAACTGAGGAATCAATCATTTCTTCTGTATGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGCGAAGAGTTGTCC
ATATTGGCCACGTTTAATCAAAACTGGTGAAACTCACCAGGGATGGCTGA
GACGAAAACCATATTCTCATAACCCTTTTAGGGAAATAGGCCAGGTTTTC
ACCGTACCACGTCACATCTTGCAATATTTGTGTAAGAAACTGCCGGAAAT
CGTCTTGTTATCATCCAGAGCGATGTGACGTTCAGTTTGCTCATGTAAAC
GTGGTAA
UFO11037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15256-RC | 1449 | CG15256-RC | 93..538 | 1..446 | 2200 | 99.6 | Plus |
| CG15256-RB | 784 | CG15256-RB | 93..538 | 1..446 | 2200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15550781..15551039 | 167..425 | 1295 | 100 | Plus |
| 2L | 23513712 | 2L | 15550464..15550629 | 1..166 | 800 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:06:33 has no hits.
UFO11037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:54 Download gff for
UFO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15256-RB | 14..469 | 1..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:01 Download gff for
UFO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15256-RB | 93..548 | 1..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:59 Download gff for
UFO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15256-RB | 93..548 | 1..454 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:59 Download gff for
UFO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15550464..15550629 | 1..166 | 98 | -> | Plus |
| 2L | 15550781..15551038 | 167..424 | 100 | -> | Plus |
| 2L | 15551097..15551118 | 425..446 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:01 Download gff for
UFO11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15550781..15551038 | 167..424 | 100 | -> | Plus |
| arm_2L | 15551097..15551118 | 425..446 | 100 | == | Plus |
| arm_2L | 15550464..15550629 | 1..166 | 98 | -> | Plus |
