UFO11038.5prime Sequence
1127 bp (1025 high quality bases) assembled on 2012-02-08
> UFO11038.5prime
CAGTCGACATGCACTTGTTGCAAGAGCCGGTCAATAAATTAAAATTTTTC
CATGCACTTGTTGCAGGAGGAGTGGCTGGAATGGTAGTGGACATAGCGCT
GTTTCCCATAGATACAGTGAAGACCCGACTGCAAAGCGAGCTGGGCTTTT
GGCGGGCAGGAGGATTCAGGGGCATCTACAAAGGACTCGCTCCTGCGGCT
GCAGGAAGTGCTCCCACGGCGGCCCTGTTTTTCTGCACCTACGAGTGCGG
AAAGCAGTTCCTTAGTTCGGTCACCCAAACCAAAGATTCACCCTATGTTC
ACATGGCAGCGGCTTCAGCAGCAGAAGTGTTGGCATGCTTGATCCGAGTT
CCCGTGGAGATTGCCAAGCAACGCTCCCAAACATTGCAGGGCAACAAACA
GTCCGGCCTGCAAATTCTACTGCGTGCCTATCGCACTGAGGGATTGAAAC
GTGGTCTGTACAGGGGATTTGGTTCCACTATCATGCGGGAGATTCCATTT
AGTCTGATACAGTTTCCGCTCTGGGAGTACTTTAAGCTGCAATGGACTCC
CCTGACCGGCTTCGATTCCACTCCTTTTTCGGTGGCTCTTTGTGGAGCTG
TCGCTGGAGGCATTTCAGCGGGATTAACTACGCCGCTCGATGTGGTCAAA
ACCCGAATTATGCTGGCTGAAAGGGAGAGTCTCAACCGACGTCGCAGTGC
CCGAAGAATTTTGCATGGCATTTACCTGGAGCGAGGCTTCAGCGGTCTGT
TTGCTGGCTTTGTGCCGCGTGTGCTGTGGATCACACTGGGCGGTGCATTC
TTCTTTGGCTTCTACGACCTGACGACGCGAATCCTTGGCGCCACCAGTAC
GGATCATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATATCATAATCATAATCATAATCATATCACAACTAGCCTAGAGA
TCCTGTCATGACTAGTGCTTGATTCTCACCAATAAAAACGCCGGCGCACG
ACGTCTGACATCGATGATTCGAGCTACGACTACACGATCAGACGATCATA
GCCGCTGCATACGAACTGTGATCTACTCCATGACTCAGTGACTGACAGTA
CTGCTGTATGCCTGACGGTATGCTGCT
UFO11038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4743-RA | 1082 | CG4743-RA | 117..955 | 19..857 | 4195 | 100 | Plus |
| CG5039-RA | 719 | CG5039-RA | 559..671 | 857..745 | 565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25679593..25680009 | 745..329 | 2085 | 100 | Minus |
| 3R | 32079331 | 3R | 25680072..25680338 | 329..63 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 25679369..25679481 | 857..745 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 25680390..25680434 | 63..19 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:06:36 has no hits.
UFO11038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:54 Download gff for
UFO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4743-RA | 117..962 | 19..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:03 Download gff for
UFO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4743-RA | 117..962 | 19..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:01 Download gff for
UFO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4743-RA | 117..962 | 19..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:01 Download gff for
UFO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25680072..25680338 | 63..329 | 100 | <- | Minus |
| 3R | 25680391..25680434 | 19..62 | 100 | | Minus |
| 3R | 25679362..25679480 | 746..865 | 96 | <- | Minus |
| 3R | 25679593..25680008 | 330..745 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:03 Download gff for
UFO11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21505084..21505202 | 746..865 | 96 | <- | Minus |
| arm_3R | 21505315..21505730 | 330..745 | 100 | <- | Minus |
| arm_3R | 21505794..21506060 | 63..329 | 100 | <- | Minus |
| arm_3R | 21506113..21506156 | 19..62 | 100 | | Minus |
