UFO11040.5prime Sequence
1097 bp (883 high quality bases) assembled on 2012-02-08
> UFO11040.5prime
CAGTCGACATGTTACAATACCTGCTGGTTTGCTTCGTTCTACTCATCAGA
CGCCGCACCGACGGCAGCCTGTGTGCCACAAAGTTCATAGTGCGCGTGCC
TCGCGACAAGGACATTGGCTTGATCTTCGATCTGACCGTCACCAATCGCA
TCAGGAGTGACAAAAGGGAGACGCTGGACTTCAATGTCGTCTCGAATGGG
GAATGCACTGTGAACACGACCCATGGGGAGCAGGTGCACGCGATGGGAAG
GATCTTTGGCGGGGATTTTGGCTCCGTCGAACCGGGCAAGAGTGAAACTG
TCTCCCTGGTCTGGCCCACTGTGTCTCTGTACAACCGTGTGGGCAGCTGC
CCCATTCTAATCTCAGCCACAAGTGCCCACGCTACGGATGCAGTGGCAAC
CGCGAGGCAGGTGCTGCACTTTGACACCCGCTTTGAGACCCTGGATCCGC
ACGGCAACAAGCTGCGCCGGCGGAAGGATTACAAGGACTGTCGCAACTGG
GACAAGGATTACCTGCGCAACTGCACACCGCTGAACTGTGAGGAGCGTTA
CTTTGGGAAACGGAGCTTTTTCAATAGGGAAACGGAACAGTGCGAACCGG
TGACTGATTGCTCGGCCCCAGGCGAGTACTACGACATCTTCAGCAACGAG
CGCGTCGATCCTGGCAATTTTCGTGTCCGAGGAGGAGCTGGACCTCATTA
AGCAAGGAAAGTTCGACTTTAATTTTTTGGATTTGCGGGGGCCACCATCG
CATGAGCCGAAAACCAACAAAGCGCTTCCTTTACAAGAAAAATACCAGGC
CAACAAGGCACTTTGTCCATTCCAAGCATGAGAAGTCAGATGATTGCGAC
ATTTGCGTAAGCTAACCCTGACCGATTTTAACGACTGCTTTCAGCATTTG
CAGGATGGTCAGTCGAGCCGGTCGCAGTTGATCCCACAATCGAGAAAAAA
TCAAGAAAAATCGCCATTTGAGGTGCCCATGCTAACGCAGCTCTATTACA
GACTGGTAATCTTCTTTAGGGACGAAGCTGGGGGGGAAGCGGAAAATCGG
TGCATAGGTAATCCAGTTCAAAAATGTCTACCCGGAATCGGAACCCT
UFO11040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31279-RE | 1454 | CG31279-RE | 17..1111 | 9..1096 | 4940 | 97.5 | Plus |
| CG31279-RD | 1525 | CG31279-RD | 87..1181 | 9..1096 | 4940 | 97.5 | Plus |
| CG31279-RC | 1485 | CG31279-RC | 17..1111 | 9..1096 | 4940 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16431281..16431707 | 323..750 | 2090 | 99.8 | Plus |
| 3R | 32079331 | 3R | 16430997..16431191 | 129..323 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 16432117..16432369 | 750..999 | 975 | 96.9 | Plus |
| 3R | 32079331 | 3R | 16430821..16430941 | 9..129 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:06:39 has no hits.
UFO11040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:55 Download gff for
UFO11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31279-RC | 7..1035 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:07 Download gff for
UFO11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31279-RC | 7..1035 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:03 Download gff for
UFO11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31279-RC | 7..1035 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:03 Download gff for
UFO11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16430811..16430941 | 1..129 | 96 | -> | Plus |
| 3R | 16430998..16431191 | 130..323 | 100 | -> | Plus |
| 3R | 16431282..16431707 | 324..750 | 99 | -> | Plus |
| 3R | 16432118..16432439 | 751..1065 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:07 Download gff for
UFO11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12256533..12256663 | 1..129 | 96 | -> | Plus |
| arm_3R | 12256720..12256913 | 130..323 | 100 | -> | Plus |
| arm_3R | 12257004..12257429 | 324..750 | 99 | -> | Plus |
| arm_3R | 12257840..12258161 | 751..1065 | 93 | -> | Plus |
