UFO11041.5prime Sequence
1108 bp (994 high quality bases) assembled on 2012-02-08
> UFO11041.5prime
CAGTCGACATGGCCCATACCATCAAGTTGGACTGGATTAGGAGGATCCTG
AATCTTTGCGGCTCTCGACAATGTCGCCTAATGCATGATGATGCTGAGGC
GCGGATCCGCACGCAGAGTCCCTGGAGACACCTGATGCGATTGACCAGGA
ATAACTCGAGCAGTACTTCCGGTGGCAATGAACCCCGCAGACAGGACCCA
AATAAACCGAAGCCGAATAGCAAGCAAATCTCATACACCGAACGGCAAAC
ACCTTTTAGGATCAACACACATCCAAATGCTTACCTAGTAGGTATGCATC
CTTTGGTCAGAGAGCGGGACAAAAGGACGAAGAGGCATAAGCGACGCCTT
CCATTTGAAAAGTCAGCAACATTGAGGTTACACAATGCGCAGCGAAGAGA
GGAGCAGCTGGCGAGGACCATGCTATCCCAGGATTGCAGTGGCCCTCACT
CATCCAGCCATACCGCCATACCGCTTAAGATTCTTCAAATGACGCAAAGG
GATCGTATGATGTCCTCGCAGCTGGTAATTGATGCGATGAGGACCAGGAA
TATGGAGAGAATGGTGCGCAAATCGGAGGCCAGGATGTTGAACGAGCGGG
TCAAGAAGCTCCTGGAGAAACAGAAAGAATCAAAGTTAGAAGGGAAGAAG
CAGCAGTCGGATGATGACTCCACTGTTCCCGATCCAAAGATCATGGGGCC
GGAACAGCGGCCACTGGAGGTCAGGCGGTGGTGCAATTGCTAAAGAAGGC
CATTTCCCTGGTCCATTTCGGTCACGAGAATCCCCCGAAGGTGGTGAAGG
ATGTAAAGATCTCCAGGATGCAGACCAAACTGGACATAGATGGCCTGCAT
CCTTGCGGCAGCTTCAATTGATTCTTTGCCAACACTGACAGCCCGCAGTC
ATCCAAAGCCTATCACATGCCGCAATCCGCTGCACAAGAGTCAATATCGG
AATCCAAATCAAATCCAACTCTCAGCAATAGCGTCAGTCTGATGAGGAGG
AGCAAGCCGCCTGATCGATTGAAGCGAAAAGTGCATTAATCGGTGTACGA
TAGCCAACTGGTTTCATAAACAGGAATGACGTAATGGCCAGTCGGCCAAC
TCCACAAT
UFO11041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15196-RB | 1587 | CG15196-RB | 108..1224 | 9..1107 | 4875 | 97.1 | Plus |
| CG15196-RC | 1578 | CG15196-RC | 108..1215 | 9..1107 | 4730 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11410458..11411159 | 279..978 | 3105 | 97.7 | Plus |
| X | 23542271 | X | 11410199..11410393 | 85..279 | 975 | 100 | Plus |
| X | 23542271 | X | 11410054..11410129 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:06:43 has no hits.
UFO11041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:56 Download gff for
UFO11041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15196-RB | 99..1213 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:08 Download gff for
UFO11041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15196-RB | 99..1213 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:05 Download gff for
UFO11041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15196-RB | 99..1213 | 1..1096 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:05 Download gff for
UFO11041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11410045..11410129 | 1..84 | 96 | -> | Plus |
| X | 11410199..11410393 | 85..279 | 100 | -> | Plus |
| X | 11410459..11411293 | 280..1096 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:08 Download gff for
UFO11041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11304078..11304162 | 1..84 | 96 | -> | Plus |
| arm_X | 11304232..11304426 | 85..279 | 100 | -> | Plus |
| arm_X | 11304492..11305326 | 280..1096 | 96 | | Plus |
