UFO11043.5prime Sequence
429 bp (429 high quality bases) assembled on 2012-02-08
> UFO11043.5prime
CAGTCGACATGAACGATGACGCCCGATCGCCGGGCGCTGGTAGTACTCCC
GGTCCACTGTCACAGCAGCCACCTGCCCTAGATACATCAGACCCTGATGG
ACGATGGTGTCGAAGAGAATGGTCCTCACCTGCCGATGCTCGCAATGCAG
ACGCTTCCCGGCGATTGTATTCCTCAGTCTTCCTCGGTAGTCCTGACAAT
TTCGGAACGAGTGCAAGCGGTGATGCCAGCAATGCCAGCATAGGAAGTGG
AGAGGGCACCGGCGAGGAGGACGACGATGCGAGCGGCAAAAAGAACCAAA
ATAAACGTGGCATTTTCCCAAAAGTAGCAACCAACATATTGAGAGCGTGG
CTGTTTCAGCATTTAACGCATCCCTACCCATCCGAGGACCAGAAGAAACA
ATTGGCCCAGGACTCCGGCCTAACTATAC
UFO11043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RA | 4226 | CG17117-RA | 2040..2460 | 9..429 | 2060 | 99.3 | Plus |
| hth-RC | 6557 | CG17117-RC | 2171..2505 | 95..429 | 1630 | 99.1 | Plus |
| hth-RC | 6557 | CG17117-RC | 2040..2131 | 9..100 | 460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10521072..10521221 | 368..219 | 735 | 99.3 | Minus |
| 3R | 32079331 | 3R | 10533911..10534007 | 195..99 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 10561909..10561996 | 96..9 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 10514284..10514345 | 429..368 | 280 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:06:49 has no hits.
UFO11043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:57 Download gff for
UFO11043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RH | 1043..1470 | 1..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:11 Download gff for
UFO11043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2033..2460 | 1..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:09 Download gff for
UFO11043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2033..2460 | 1..429 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:09 Download gff for
UFO11043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10561905..10562000 | 1..99 | 93 | | Minus |
| 3R | 10533911..10534006 | 100..195 | 100 | <- | Minus |
| 3R | 10514284..10514344 | 369..429 | 96 | <- | Minus |
| 3R | 10521072..10521220 | 220..368 | 99 | <- | Minus |
| 3R | 10529439..10529462 | 196..219 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:11 Download gff for
UFO11043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6340006..6340066 | 369..429 | 96 | <- | Minus |
| arm_3R | 6346794..6346942 | 220..368 | 99 | <- | Minus |
| arm_3R | 6355161..6355184 | 196..219 | 100 | <- | Minus |
| arm_3R | 6359633..6359728 | 100..195 | 100 | <- | Minus |
| arm_3R | 6387627..6387722 | 1..99 | 93 | | Minus |
