UFO11044.5prime Sequence
1164 bp (1040 high quality bases) assembled on 2012-02-08
> UFO11044.5prime
CAGTCGACATGGCCATCCTGCCGCTGAGGACGCAGGTGCGCGGGCCAGCG
CCCAGTGCGAATATTGAGAGCGACATCATTGATGAGTCACTGTACTACTT
CAAAGCCAATGTCTTCTTTCGCACGTACGAAATCAAGTCCGACGTGGATC
GCGTGCTCATCTATGTGACGCTCTACATAACAGAGTGCCTCAAGAAGCTC
AATCGCTCCACGAGCAAGGCCCAGGGACAGCAGGACATGTACAGCCTGGC
CATCTCCAAGTTCGACATTCCCGGCGATGCTGGCTTCCCATTGAACGCCG
TCTATGCCAAGCCGCAAACGGCCCAGGATGCGGATCTGATGCGCCAGTAC
CTGCTGCAGCTGCGCCACGAAACCGGCAACCGGGTACTGGAGAAGGTCTT
CAACACCGAGGATGGCAAGCCCAATAAATGGTGGACCTGCTTCGCGAAGA
AAAAGTTCATGGAGAAGAGTCTGGCTGGACCTGGACAAGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATCTCATAAACCCTTTAGGGAAATAGGCCAGTTTTCACGTAC
ACGCCACATCTGCGAATATATGTGTAGAACTGCGAAATCGTCTGTCATTC
ACTCCAGAGCGATGAACGTTCAGTGCTCATGAAACGGGTACAGGTGAACC
TATCCATATTCCCAGGTCACGCTCATGCATCGAATCGATGAACATCCATC
AGGCGGCCAGAATG
UFO11044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-RE | 1123 | CG4560-RE | 168..649 | 7..488 | 2410 | 100 | Plus |
| Arpc3A-RC | 814 | CG4560-RC | 168..649 | 7..488 | 2410 | 100 | Plus |
| Arpc3B-RC | 693 | CG8936-RC | 185..616 | 45..485 | 445 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15835195..15835547 | 136..488 | 1765 | 100 | Plus |
| 3R | 32079331 | 3R | 15834956..15835086 | 7..137 | 655 | 100 | Plus |
| X | 23542271 | X | 17104648..17104808 | 485..325 | 310 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:06:53 has no hits.
UFO11044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:58 Download gff for
UFO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RD | 283..773 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:13 Download gff for
UFO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 162..652 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:10 Download gff for
UFO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 162..652 | 1..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:10 Download gff for
UFO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15834950..15835086 | 1..137 | 97 | -> | Plus |
| 3R | 15835197..15835547 | 138..488 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:13 Download gff for
UFO11044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11660919..11661269 | 138..488 | 100 | == | Plus |
| arm_3R | 11660672..11660808 | 1..137 | 97 | -> | Plus |
